Browse Element(s) Details


OsAffx.15514.1.S1_at

Description tigr:9634.m01977
TID=OsAffx.15514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2033011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20300OsAffx.27731.1.S1_at11/116+11656555..11657562hypothetical protein
LOC_Os06g20310Os.49898.2.S1_at11/116+11668580..11672431expressed protein
LOC_Os06g20310Os.49898.1.S1_at10/116+11668580..11672431expressed protein
LOC_Os06g20320Os.5054.1.S1_at11/116+11676004..11681090trigger factor family protein, expressed
LOC_Os06g20320Os.27772.1.S1_x_at1/116+11676004..11681090trigger factor family protein, expressed
LOC_Os06g20330OsAffx.15514.1.S1_at11/116+11681267..11682206expressed protein
LOC_Os06g20340Os.6777.1.S1_at10/116+11683184..11686911Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354OsAffx.27732.1.S1_s_at11/116+11692032..11694276expressed protein
LOC_Os06g20354Os.50852.1.S1_at11/116+11692032..11694276expressed protein
LOC_Os06g20354OsAffx.15515.1.S1_at10/116+11692032..11694276expressed protein
LOC_Os06g20370Os.12198.1.S1_a_at11/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370Os.12198.1.S1_at11/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370Os.12198.2.S1_x_at10/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370OsAffx.13408.1.S1_at1/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380OsAffx.15516.1.S1_at9/116+11703388..11705017hypothetical protein
LOC_Os06g20380Os.42235.1.S1_at1/116+11703388..11705017hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15514.1.S1_at--22--4811Chr06:11682122..11682146 (25 bp)
GCTCTGCTGGATGGCACAACTGTGA
LOC_Os06g20330
OsAffx.15514.1.S1_at--879--6231Chr06:11682113..11682137 (25 bp)
GATGGCACAACTGTGATAGATCACT
LOC_Os06g20330
OsAffx.15514.1.S1_at--977--8831Chr06:11682100..11682124 (25 bp)
TGATAGATCACTTCGGCGTGTGCTC
LOC_Os06g20330
OsAffx.15514.1.S1_at--8--10591Chr06:11682089..11682113 (25 bp)
TTCGGCGTGTGCTCGACTACTCGTG
LOC_Os06g20330
OsAffx.15514.1.S1_at--455--71Chr06:11681394..11681418 (25 bp)
ATTGCCAAGGACAGAAATTCGAAAA
LOC_Os06g20330
OsAffx.15514.1.S1_at--490--5531Chr06:11681374..11681398 (25 bp)
GAAAAACATCCCATTGAGCCTCAAA
LOC_Os06g20330
OsAffx.15514.1.S1_at--689--5851Chr06:11681359..11681383 (25 bp)
GAGCCTCAAAGGTCAGCTAGACTGT
LOC_Os06g20330
OsAffx.15514.1.S1_at--927--4851Chr06:11681344..11681368 (25 bp)
GCTAGACTGTTGAGCGATCCCAAGT
LOC_Os06g20330
OsAffx.15514.1.S1_at--449--6651Chr06:11681336..11681360 (25 bp)
GTTGAGCGATCCCAAGTTCCTCATA
LOC_Os06g20330
OsAffx.15514.1.S1_at--910--6371Chr06:11681329..11681353 (25 bp)
GATCCCAAGTTCCTCATACAGCAAA
LOC_Os06g20330
OsAffx.15514.1.S1_at--1068--6691Chr06:11681321..11681345 (25 bp)
GTTCCTCATACAGCAAACCTCAGAG
LOC_Os06g20330
Target Sequence 
GCTCTGCTGGATGGCACAACTGTGATAGATCACTTCGGCGTGTGCTCGACTACTCGTGGGCACATGGGGATCTTGAAAGG
AAATTGCCAAGGACAGAAATTCGAAAAACATCCCATTGAGCCTCAAAGGTCAGCTAGACTGTTGAGCGATCCCAAGTTCC
TCATACAGCAAACCTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis