Browse Element(s) Details


Os.49898.1.S1_at

Description gb:AK119309.1
DB_XREF= gi:37988932
TID=Os.49898.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G02, full insert sequence.
FL= gb:AK119309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2031010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20290OsAffx.27730.1.S1_at11/116+11652823..11653706hypothetical protein
LOC_Os06g20300OsAffx.27731.1.S1_at11/116+11656555..11657562hypothetical protein
LOC_Os06g20310Os.49898.2.S1_at11/116+11668580..11672431expressed protein
LOC_Os06g20310Os.49898.1.S1_at10/116+11668580..11672431expressed protein
LOC_Os06g20320Os.5054.1.S1_at11/116+11676004..11681090trigger factor family protein, expressed
LOC_Os06g20320Os.27772.1.S1_x_at1/116+11676004..11681090trigger factor family protein, expressed
LOC_Os06g20330OsAffx.15514.1.S1_at11/116+11681267..11682206expressed protein
LOC_Os06g20340Os.6777.1.S1_at10/116+11683184..11686911Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354OsAffx.27732.1.S1_s_at11/116+11692032..11694276expressed protein
LOC_Os06g20354Os.50852.1.S1_at11/116+11692032..11694276expressed protein
LOC_Os06g20354OsAffx.15515.1.S1_at10/116+11692032..11694276expressed protein
LOC_Os06g20370Os.12198.1.S1_a_at11/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370Os.12198.1.S1_at11/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370Os.12198.2.S1_x_at10/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370OsAffx.13408.1.S1_at1/116+11695841..11700294microtubule-associated protein MAP65-1a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49898.1.S1_at--826--1831Chr06:11669095..11669119 (25 bp)
ACGCGTGCCATGCTGTCATTTTTTG
LOC_Os06g20310
Os.49898.1.S1_at--82--6811Chr06:11669071..11669095 (25 bp)
GTTTTGATCTACTTGTTTCTTCTGT
LOC_Os06g20310
Os.49898.1.S1_at--878--6791Chr06:11669048..11669072 (25 bp)
GTTATTTCAGATCGGTCTATCGGTT
LOC_Os06g20310
Os.49898.1.S1_at--812--7811Chr06:11669035..11669059 (25 bp)
GGTCTATCGGTTATGCATTCTGTGC
LOC_Os06g20310
Os.49898.1.S1_at--452--3892Chr02:23985652..23985887 (25 bp)
CTGTGCCTTTGTGACTTTTTGTTTA
NONE
Os.49898.1.S1_at--144--6831Chr06:11668996..11669020 (25 bp)
GTTTAGGTCCTTGCTATTGTTGAAA
LOC_Os06g20310
Os.49898.1.S1_at--401--8091NONE
GGACGGTGTAGTGCCGCCCTAGTAC
NONE
Os.49898.1.S1_at--1121--51Chr06:11668748..11668772 (25 bp)
ATTGCAATGTTACCAGTCTGAAGCT
LOC_Os06g20310
Os.49898.1.S1_at--556--991Chr06:11668661..11668685 (25 bp)
AGGATGGATCGTCATGGTTCCCTTT
LOC_Os06g20310
Os.49898.1.S1_at--955--8571Chr06:11668647..11668671 (25 bp)
TGGTTCCCTTTCTATTTCTCTTTTG
LOC_Os06g20310
Os.49898.1.S1_at--933--9551Chr06:11668629..11668653 (25 bp)
TCTTTTGGTCCTATGTATATACGCA
LOC_Os06g20310
Target Sequence 
ACGCGTGCCATGCTGTCATTTTTTGTTTTGATCTACTTGTTTCTTCTGTTATTTCAGATCGGTCTATCGGTTATGCATTC
TGTGCCTTTGTGACTTTTTGTTTAGGTCCTTGCTATTGTTGAAAATTGAATGTGAAGAAGACAAAATTCTGTTTTTGGGG
TGTGTTTGTGGTTTCTTCTTTTGCTGGGTATGGAGGTGCGATTTTCCCCATCTGCAGTCTTCCGTTCTGGGCGCGCGTCT
TCGTGCTCTCCGGTGAGAGCGACATGGGCGGCCGCGGCGGCGTCCACCACCGGCGCTGGGACGGTGTAGTGCCGCCCTAG
TACCTTTACCATCCAAGCCTTTCCAACATTGCAATGTTACCAGTCTGAAGCTTTCTAACAATAGCACGGCATAGAAATAT
TATCTCTCTGAGGATGAATCATTTTACTCAACTAAGGATGGATCGTCATGGTTCCCTTTCTATTTCTCTTTTGGTCCTAT
GTATATACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis