Browse Element(s) Details


OsAffx.27730.1.S1_at

Description tigr:9634.m01972
TID=OsAffx.27730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20270OsAffx.27729.1.S1_at11/116+11629062..11630288expressed protein
LOC_Os06g20280OsAffx.15513.1.S1_at11/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.15513.1.S1_x_at10/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_x_at3/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_at1/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20290OsAffx.27730.1.S1_at11/116+11652823..11653706hypothetical protein
LOC_Os06g20300OsAffx.27731.1.S1_at11/116+11656555..11657562hypothetical protein
LOC_Os06g20310Os.49898.2.S1_at11/116+11668580..11672431expressed protein
LOC_Os06g20310Os.49898.1.S1_at10/116+11668580..11672431expressed protein
LOC_Os06g20320Os.5054.1.S1_at11/116+11676004..11681090trigger factor family protein, expressed
LOC_Os06g20320Os.27772.1.S1_x_at1/116+11676004..11681090trigger factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27730.1.S1_at--523--5951Chr06:11653466..11653490 (25 bp)
GAGAAGGTCTCTACGGTCACCGTGA
LOC_Os06g20290
OsAffx.27730.1.S1_at--942--1771Chr06:11653448..11653472 (25 bp)
ACCGTGAAGCCGTCTGCGAAGCAGG
LOC_Os06g20290
OsAffx.27730.1.S1_at--654--5491Chr06:11653419..11653443 (25 bp)
GAACACTGTAGCCACGATGCAAATC
LOC_Os06g20290
OsAffx.27730.1.S1_at--391--3951Chr06:11653262..11653286 (25 bp)
CGGAGCCATCCCACAAGGTGGTGAT
LOC_Os06g20290
OsAffx.27730.1.S1_at--460--651Chr06:11653239..11653263 (25 bp)
ATGAAAATGTTTTGTGCCGTCCCGG
LOC_Os06g20290
OsAffx.27730.1.S1_at--396--6471Chr06:11653215..11653239 (25 bp)
GATAAGCTGGAGCACATCGCCACAT
LOC_Os06g20290
OsAffx.27730.1.S1_at--121--9331Chr06:11653199..11653223 (25 bp)
TCGCCACATCGATTGAGACTCTCTT
LOC_Os06g20290
OsAffx.27730.1.S1_at--194--8911Chr06:11653186..11653210 (25 bp)
TGAGACTCTCTTGGATCTCTCGACC
LOC_Os06g20290
OsAffx.27730.1.S1_at--178--6171Chr06:11653122..11653146 (25 bp)
GAGGATTGGCTCATGTTTACTGATG
LOC_Os06g20290
OsAffx.27730.1.S1_at--621--2871Chr06:11653095..11653119 (25 bp)
AAGTGGGCTCGCTCTCTAGAAGGAG
LOC_Os06g20290
OsAffx.27730.1.S1_at--797--1831Chr06:11652894..11652918 (25 bp)
ACGCATGTCCAAAAGTCGCCCAAGT
LOC_Os06g20290
Target Sequence 
GAGAAGGTCTCTACGGTCACCGTGAAGCCGTCTGCGAAGCAGGCATGGAACACTGTAGCCACGATGCAAATCGGGGCTGA
TTGCGTGAAGGCAGCGAAGGGGCACTCGCGGTCCTTGGTGACCTGGAGGCCGGAGCCATCCCACAAGGTGGTGATGAAAA
TGTTTTGTGCCGTCCCGGATAAGCTGGAGCACATCGCCACATCGATTGAGACTCTCTTGGATCTCTCGACCCTGACGGTG
GAAGGCGTGACCGGGCGACTGAGCGTCGTTGAGGATTGGCTCATGTTTACTGATGAGAAGTGGGCTCGCTCTCTAGAAGG
AGCGGGCAATGTCGGAGGGGGCCTCTGGGTCTTGCTCGATCAGGGCAGCGGGGACTTGGCAGTTGATGCCGCAAGGAGAA
ACAAGATGTCCGGAAGGACTCCCGCCGCGATGCAAACTGCGGCAAATGGTGGCGACGGTGGAGGCGGGTGCTACGCCTGC
CGGAATAGGGGCAATATCACGCATGTCCAAAAGTCGCCCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis