Browse Element(s) Details

Os.49898.2.S1_at

Description

gb:AK120750.1
DB_XREF= gi:37990373
TID=Os.49898.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004O19, full insert sequence.
FL= gb:AK120750.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20310	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20290	OsAffx.27730.1.S1_at	11/11	6	+	11652823..11653706	hypothetical protein
LOC_Os06g20300	OsAffx.27731.1.S1_at	11/11	6	+	11656555..11657562	hypothetical protein
LOC_Os06g20310	Os.49898.2.S1_at	11/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20310	Os.49898.1.S1_at	10/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20320	Os.5054.1.S1_at	11/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20320	Os.27772.1.S1_x_at	1/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20330	OsAffx.15514.1.S1_at	11/11	6	+	11681267..11682206	expressed protein
LOC_Os06g20340	Os.6777.1.S1_at	10/11	6	+	11683184..11686911	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354	OsAffx.27732.1.S1_s_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	Os.50852.1.S1_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	OsAffx.15515.1.S1_at	10/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49898.2.S1_at--16--135	1	Chr06:11669980..11670004 (25 bp)	AGAGTGTTGCACGAGTAGGCTTCAT	LOC_Os06g20310
Os.49898.2.S1_at--130--667	1	Chr06:11669975..11669999 (25 bp)	GTTGCACGAGTAGGCTTCATGCTTT	LOC_Os06g20310
Os.49898.2.S1_at--754--1009	1	Chr06:11669965..11669989 (25 bp)	TAGGCTTCATGCTTTTTTCACTGTT	LOC_Os06g20310
Os.49898.2.S1_at--496--353	1	Chr06:11669958..11669982 (25 bp)	CATGCTTTTTTCACTGTTTGTCTTG	LOC_Os06g20310
Os.49898.2.S1_at--897--333	1	Chr06:11669947..11669971 (25 bp)	CACTGTTTGTCTTGTACTGCCTGTA	LOC_Os06g20310
Os.49898.2.S1_at--934--1077	1	Chr06:11669941..11669965 (25 bp)	TTGTCTTGTACTGCCTGTATCGAAT	LOC_Os06g20310
Os.49898.2.S1_at--1143--699	1	Chr06:11669934..11669958 (25 bp)	GTACTGCCTGTATCGAATGGCACTT	LOC_Os06g20310
Os.49898.2.S1_at--463--529	1	Chr06:11669920..11669944 (25 bp)	GAATGGCACTTGATCCTACACTGGA	LOC_Os06g20310
Os.49898.2.S1_at--332--825	1	Chr06:11669916..11669940 (25 bp)	GGCACTTGATCCTACACTGGAGATG	LOC_Os06g20310
Os.49898.2.S1_at--134--987	1	Chr06:11669904..11669928 (25 bp)	TACACTGGAGATGACTGGCCACTCT	LOC_Os06g20310
Os.49898.2.S1_at--179--533	1	Chr06:11669554..11669680 (25 bp)	GAAGTATTCAGAGGTTGGTTTCTGG	LOC_Os06g20310

Target Sequence

AGAGTGTTGCACGAGTAGGCTTCATGCTTTTTTCACTGTTTGTCTTGTACTGCCTGTATCGAATGGCACTTGATCCTACA
CTGGAGATGACTGGCCACTCTGCCCCCTCCAGCTCCGGCTGACCCAGGGTTTGCATGGAAATTGATGAGGACCTACGAAG
CACTTGCAGTTGTAGTAACATCGGGACAGGTCATCTCTTGGGTTTTGAGTTGTTGCTGTGGAAAGACATAGATGACCAGG
AAGTATTCAGAGGTTGGTTTCTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis