Browse Element(s) Details

OsAffx.27732.1.S1_s_at

Description

tigr:9634.m01981
TID=OsAffx.27732.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20354	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20310	Os.49898.2.S1_at	11/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20310	Os.49898.1.S1_at	10/11	6	+	11668580..11672431	expressed protein
LOC_Os06g20320	Os.5054.1.S1_at	11/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20320	Os.27772.1.S1_x_at	1/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20330	OsAffx.15514.1.S1_at	11/11	6	+	11681267..11682206	expressed protein
LOC_Os06g20340	Os.6777.1.S1_at	10/11	6	+	11683184..11686911	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354	OsAffx.27732.1.S1_s_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	Os.50852.1.S1_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	OsAffx.15515.1.S1_at	10/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380	OsAffx.15516.1.S1_at	9/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20380	Os.42235.1.S1_at	1/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20390	Os.5637.1.S1_at	10/11	6	+	11711593..11716063	expressed protein
LOC_Os06g20400	Os.18614.1.S1_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_s_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_at	10/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27732.1.S1_s_at--232--3	1	Chr06:11693506..11693530 (25 bp)	ATTGGCGTGACGTTGTGCGCACCTA	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--82--373	1	Chr06:11693528..11693552 (25 bp)	CTACGACCGTATGCTCGCGTCAGGG	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--228--767	1	Chr06:11693551..11693575 (25 bp)	GGGTCACGCCTAACGCGTATACGCT	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--751--31	1	Chr06:11693569..11693593 (25 bp)	ATACGCTCGCGGTTCTGGTTAAGGG	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--894--935	1	Chr06:11693596..11693620 (25 bp)	TCGCAGCTAGCGACCGGTTCATGGA	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--1157--175	1	Chr06:11693608..11693632 (25 bp)	ACCGGTTCATGGAGGCTGGCAAGTA	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--802--621	1	Chr06:11693619..11693643 (25 bp)	GAGGCTGGCAAGTACATAGTGGAAA	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--630--1007	1	Chr06:11693635..11693659 (25 bp)	TAGTGGAAATGCTTGACCGCGGAAT	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--347--527	1	Chr06:11693656..11693680 (25 bp)	GAATGCGACCAAATGCAGCGACATA	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--453--165	1	Chr06:11693672..11693696 (25 bp)	AGCGACATACCTGGCTGTGTTTGAG	LOC_Os06g20354
OsAffx.27732.1.S1_s_at--667--391	1	Chr06:11693682..11693706 (25 bp)	CTGGCTGTGTTTGAGGCATACGTGA	LOC_Os06g20354

Target Sequence

ATTGGCGTGACGTTGTGCGCACCTACGACCGTATGCTCGCGTCAGGGGTCACGCCTAACGCGTATACGCTCGCGGTTCTG
GTTAAGGGGCTCGCAGCTAGCGACCGGTTCATGGAGGCTGGCAAGTACATAGTGGAAATGCTTGACCGCGGAATGCGACC
AAATGCAGCGACATACCTGGCTGTGTTTGAGGCATACGTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis