Browse Element(s) Details


OsAffx.15513.1.S1_x_at

Description tigr:9634.m01971
TID=OsAffx.15513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2028010/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20230Os.40360.1.S1_at9/116+11611768..11613493hypothetical protein
LOC_Os06g20230Os.40360.1.S1_x_at8/116+11611768..11613493hypothetical protein
LOC_Os06g20230Os.40855.2.S1_x_at3/116+11611768..11613493hypothetical protein
LOC_Os06g20230Os.40855.5.S1_x_at1/116+11611768..11613493hypothetical protein
LOC_Os06g20240NANA6+11617544..11618253hypothetical protein
LOC_Os06g20250OsAffx.24317.5.S1_x_at2/116+11619379..11620166retrotransposon, putative, centromere-specific
LOC_Os06g20260OsAffx.27728.1.S1_at11/116+11623801..11626173expressed protein
LOC_Os06g20270OsAffx.27729.1.S1_at11/116+11629062..11630288expressed protein
LOC_Os06g20280OsAffx.15513.1.S1_at11/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.15513.1.S1_x_at10/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_x_at3/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280OsAffx.8319.1.S1_at1/116+11636291..11642315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20290OsAffx.27730.1.S1_at11/116+11652823..11653706hypothetical protein
LOC_Os06g20300OsAffx.27731.1.S1_at11/116+11656555..11657562hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15513.1.S1_x_at--484--7931Chr06:11642253..11642277 (25 bp)
GGATTCGGACTGCAGCACATCACCA
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--1003--6551Chr06:11642252..11642276 (25 bp)
GATTCGGACTGCAGCACATCACCAA
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--248--10611Chr06:11642250..11642274 (25 bp)
TTCGGACTGCAGCACATCACCAACT
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--171--9451Chr06:11642249..11642273 (25 bp)
TCGGACTGCAGCACATCACCAACTT
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--1147--8111Chr06:11642247..11642271 (25 bp)
GGACTGCAGCACATCACCAACTTCT
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--643--5711Chr06:11642246..11642270 (25 bp)
GACTGCAGCACATCACCAACTTCTG
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--683--1971Chr06:11642245..11642269 (25 bp)
ACTGCAGCACATCACCAACTTCTGA
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--981--9031Chr06:11642243..11642267 (25 bp)
TGCAGCACATCACCAACTTCTGACG
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--747--5051Chr06:11642242..11642266 (25 bp)
GCAGCACATCACCAACTTCTGACGG
LOC_Os06g20280
OsAffx.15513.1.S1_x_at--333--10731NONE
TTGGGCGTGCAAGAACAAATACCTT
NONE
OsAffx.15513.1.S1_x_at--623--8991Chr06:11641740..11642207 (25 bp)
TGCAAGAACAAATACCTTCGTGGTT
LOC_Os06g20280
Target Sequence 
GGATTCGGACTGCAGCACATCACCAACTTCTGACGGCCGCCACGACTTCATGCGAACTCCGATTTGGGCGTGCAAGAACA
AATACCTTCGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15513.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis