Browse Element(s) Details


Os.26978.1.S1_a_at

Description gb:AK059265.1
DB_XREF= gi:32969283
TID=Os.26978.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A12, full insert sequence.
FL= gb:AK059265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4061011/11early flowering 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40564NANA11+23707094..23708191hypothetical protein
LOC_Os11g40570Os.24003.2.S1_x_at11/1111+23709332..23713269Plant viral-response family protein, expressed
LOC_Os11g40590Os.37812.1.S1_s_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40590OsAffx.31408.1.S1_x_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40600Os.49710.1.S1_at10/1111+23725097..23726489expressed protein
LOC_Os11g40610Os.26978.1.S1_a_at11/1111+23729086..23732131early flowering 4, putative, expressed
LOC_Os11g40620NANA11+23746080..23746340hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_s_at11/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_at8/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.3.S1_at7/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.1.S1_at6/1111+23749067..23751121hypothetical protein
LOC_Os11g40640NANA11+23751629..23754250transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009648biological_processphotoperiodism
GO:0009909biological_processregulation of flower development
GO:0042753biological_processpositive regulation of circadian rhythm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26978.1.S1_a_at--1081--4851Chr11:23731588..23731612 (25 bp)
GCTAGGATCAGGTGCCATTCTTGGC
LOC_Os11g40610
Os.26978.1.S1_a_at--10--4451Chr11:23731601..23731625 (25 bp)
GCCATTCTTGGCATTTTGATGCTCA
LOC_Os11g40610
Os.26978.1.S1_a_at--163--7631Chr11:23731690..23731714 (25 bp)
GGGACTTCTCTAGTGGTGTTACTAT
LOC_Os11g40610
Os.26978.1.S1_a_at--388--9751Chr11:23731731..23731755 (25 bp)
TAATTTCTTTCTTGACCTCTTCATC
LOC_Os11g40610
Os.26978.1.S1_a_at--11--2291Chr11:23731767..23731791 (25 bp)
AAATGCTTTTGCACGAGTGTATCAT
LOC_Os11g40610
Os.26978.1.S1_a_at--156--6951Chr11:23731857..23731881 (25 bp)
GTAGTAGTTCTTGACCATCTCTGCT
LOC_Os11g40610
Os.26978.1.S1_a_at--716--9091Chr11:23731878..23731902 (25 bp)
TGCTCATGGTTGTCAGCCTTACTGA
LOC_Os11g40610
Os.26978.1.S1_a_at--573--2031Chr11:23731904..23731928 (25 bp)
ACTAGCATTCAGTTGTTTGATTCCT
LOC_Os11g40610
Os.26978.1.S1_a_at--866--5691Chr11:23731929..23731953 (25 bp)
GACTAGATTCAGGTTGTTGTACATG
LOC_Os11g40610
Os.26978.1.S1_a_at--587--31Chr11:23731998..23732022 (25 bp)
ATTGGTCAGTTCATCATCTCTCTCA
LOC_Os11g40610
Os.26978.1.S1_a_at--841--6491Chr11:23732026..23732050 (25 bp)
GATAGATTTCAATGTCTCACTGGAT
LOC_Os11g40610
Target Sequence 
GCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTG
ATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACC
TCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAG
CTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTA
GCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCA
GGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26978.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis