Browse Element(s) Details


OsAffx.19278.1.S1_at

Description tigr:9630.m04474
TID=OsAffx.19278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT005462 putative protein phosphatase 2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g455007/11hypothetical protein
LOC_Os11g406306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45460Os.35302.1.S1_at11/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_s_at5/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_x_at1/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45470NANA2+27655556..27655789hypothetical protein
LOC_Os02g45480Os.23123.1.S1_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45480Os.23123.1.S2_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45490Os.49132.1.S1_at9/112+27662040..27665552expressed protein
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class
LOC_Os02g45520Os.18559.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45520OsAffx.12508.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19278.1.S1_at--319--7653Chr11:23750354..23750378 (25 bp)
GGGAGAAAGCAAACCATTCCACCTC
LOC_Os11g40630
OsAffx.19278.1.S1_at--415--1532Chr02:27674784..27674808 (25 bp)
AGCTTCGTCAACTCCATAAAATAAA
LOC_Os02g45500
OsAffx.19278.1.S1_at--1027--333Chr11:23750420..23750444 (25 bp)
ATAAATCATACAGGGAAACCACGTG
LOC_Os11g40630
OsAffx.19278.1.S1_at--493--1971Chr02:28070738..28070762 (25 bp)
ACTGTTTTTTTGGATGCTCGGTCCG
NONE
OsAffx.19278.1.S1_at--1061--611Chr02:28070725..28070749 (25 bp)
ATGCTCGGTCCGCTCAAGGTTTGTG
NONE
OsAffx.19278.1.S1_at--152--4231Chr02:28070716..28070740 (25 bp)
CCGCTCAAGGTTTGTGGGATCCCAT
NONE
OsAffx.19278.1.S1_at--595--1011Chr02:28070709..28070733 (25 bp)
AGGTTTGTGGGATCCCATCCCTTAT
NONE
OsAffx.19278.1.S1_at--283--10433Chr11:23750628..23750652 (25 bp)
TTATCCACTGGATAACTTCGATTGG
LOC_Os11g40630
OsAffx.19278.1.S1_at--795--2053Chr11:23750642..23750666 (25 bp)
ACTTCGATTGGACCGGTTACATGCC
LOC_Os11g40630
OsAffx.19278.1.S1_at--1072--10833Chr11:23750649..23750673 (25 bp)
TTGGACCGGTTACATGCCCAGTGGT
LOC_Os11g40630
OsAffx.19278.1.S1_at--933--1753Chr11:23750676..23750893 (25 bp)
ACCTCTCTCCCGATTGGATATCAAT
LOC_Os11g40630
Target Sequence 
GGGAGAAAGCAAACCATTCCACCTCCTCCCCCACATGATGAGAGCAAGCTTCGTCAACTCCATAAAATAAATCATACAGG
GAAACCACGTGATTGGAGGAAGCTCCACGCAGAATATGTTAACCAATACAATAGAATTTGGCAAAGCATGGTTGATGAGG
AGCAACATTTTGACCAGGCAAGTTTGCCACAATATCGTCATTGGTTTCAACAGTATGGGATGTACACTGTTTTTTTGGAT
GCTCGGTCCGCTCAAGGTTTGTGGGATCCCATCCCTTATCCACTGGATAACTTCGATTGGACCGGTTACATGCCCAGTGG
TCCACCTCTCTCCCGATTGGATATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis