Browse Element(s) Details


Os.18559.1.S1_at

Description gb:AU030644
DB_XREF= gi:3764144
DB_XREF=AU030644
CLONE=E60048_2Z
TID=Os.18559.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18559 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_567674.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4552011/11SPX domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class
LOC_Os02g45520Os.18559.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45520OsAffx.12508.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45540Os.6053.1.S1_at11/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45540Os.51333.1.S1_at10/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18559.1.S1_at--562--2531Chr02:27695943..27695967 (25 bp)
AACTCCCTGTACTGAGAATCTGTTC
LOC_Os02g45520
Os.18559.1.S1_at--1036--6711Chr02:27695964..27695988 (25 bp)
GTTCTCTCCGTCTGTATGTACAAGA
LOC_Os02g45520
Os.18559.1.S1_at--45--2711Chr02:27695988..27696012 (25 bp)
AAGCAGTTGACACAGTTCCTGGCCA
LOC_Os02g45520
Os.18559.1.S1_at--370--5631Chr02:27695996..27696020 (25 bp)
GACACAGTTCCTGGCCACTTGGGTG
LOC_Os02g45520
Os.18559.1.S1_at--781--3311Chr02:27696011..27696035 (25 bp)
CACTTGGGTGGCCTGTAAAATGTTA
LOC_Os02g45520
Os.18559.1.S1_at--604--2951Chr02:27696029..27696053 (25 bp)
AATGTTAGGCCGATGCAGCTAATGC
LOC_Os02g45520
Os.18559.1.S1_at--909--5051Chr02:27696043..27696067 (25 bp)
GCAGCTAATGCTGGTCTCTAATTGT
LOC_Os02g45520
Os.18559.1.S1_at--701--7811Chr02:27696055..27696079 (25 bp)
GGTCTCTAATTGTCATCTGTGGAAG
LOC_Os02g45520
Os.18559.1.S1_at--917--2371Chr02:27696141..27696165 (25 bp)
AAACTCTACTGATCAAATGCTCCAA
LOC_Os02g45520
Os.18559.1.S1_at--471--2431Chr02:27696164..27696188 (25 bp)
AAAAGCCTCTTGGACAATCCTGCTT
LOC_Os02g45520
Os.18559.1.S1_at--33--10871Chr02:27696173..27696197 (25 bp)
TTGGACAATCCTGCTTGCACCGGAC
LOC_Os02g45520
Target Sequence 
AACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGC
CTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTANCA
GTTACTAAGTTAACAGATGATGTAAGANCATGTTCAATAAACTCTACTGATCAAATGCTCCAAAAGCCTCTTGGACAATC
CTGCTTGCACCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis