Browse Element(s) Details


OsAffx.2968.1.S1_at

Description tigr:9630.m04418
TID=OsAffx.2968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4556011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45520Os.18559.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45520OsAffx.12508.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45540Os.6053.1.S1_at11/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45540Os.51333.1.S1_at10/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein
LOC_Os02g45570Os.47323.1.S1_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45570Os.47323.1.S1_x_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45600Os.35377.1.S1_a_at11/112+27738383..27741375rac GTPase activating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2968.1.S1_at--668--4231Chr02:27717568..27717592 (25 bp)
CCGTCTTTGGAGTTGCGTTGCTGCA
LOC_Os02g45560
OsAffx.2968.1.S1_at--278--7551Chr02:27717419..27717443 (25 bp)
GTGGCGTCGGAAGGTATCCTATCTC
LOC_Os02g45560
OsAffx.2968.1.S1_at--198--7671Chr02:27717388..27717412 (25 bp)
GGGATAGCTATGATCATCGGAGTCT
LOC_Os02g45560
OsAffx.2968.1.S1_at--1068--6091Chr02:27717369..27717393 (25 bp)
GAGTCTGATAATCTGTCCATGGCAA
LOC_Os02g45560
OsAffx.2968.1.S1_at--868--2471Chr02:27717304..27717328 (25 bp)
AACAGCATCTACTCAGAGGACCGGG
LOC_Os02g45560
OsAffx.2968.1.S1_at--958--7611Chr02:27717282..27717306 (25 bp)
GGGAAGCAGATACCCTATCTCGATA
LOC_Os02g45560
OsAffx.2968.1.S1_at--610--6491Chr02:27717261..27717285 (25 bp)
GATAGCTTTGCAGCATGCGAACCGT
LOC_Os02g45560
OsAffx.2968.1.S1_at--371--9151Chr02:27717246..27717270 (25 bp)
TGCGAACCGTTCATACAGCCACATA
LOC_Os02g45560
OsAffx.2968.1.S1_at--673--11Chr02:27717212..27717236 (25 bp)
ATTAACAATTTACAGCCCGGCGGCT
LOC_Os02g45560
OsAffx.2968.1.S1_at--341--4271Chr02:27717196..27717220 (25 bp)
CCGGCGGCTCAATCAGTCAAGATGT
LOC_Os02g45560
OsAffx.2968.1.S1_at--97--1171Chr02:27717182..27717206 (25 bp)
AGTCAAGATGTCAGTCCGCCCGAAT
LOC_Os02g45560
Target Sequence 
CCGTCTTTGGAGTTGCGTTGCTGCAGGGGTTACCCCACGGCCCAGCTGTCCAACTCGTGTCGCTACCTGCCAGAGCTGGC
CTGCATGCCGCTAGGCGTCGACGTCGTCGCGTGCTGTTCGGGAAGGACGGGGACCGAGTCACCGAGAACGTGGCGTCGGA
AGGTATCCTATCTCCGGCCGGGGATAGCTATGATCATCGGAGTCTGATAATCTGTCCATGGCAAATGCTTGGTGCTGGAG
CCTGGCGGCCTCTCAATCTACTCCAACAGCATCTACTCAGAGGACCGGGAAGCAGATACCCTATCTCGATAGCTTTGCAG
CATGCGAACCGTTCATACAGCCACATAGACCAGTACATTAACAATTTACAGCCCGGCGGCTCAATCAGTCAAGATGTCAG
TCCGCCCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis