Browse Element(s) Details


Os.47323.1.S1_at

Description gb:AK108170.1
DB_XREF= gi:32993379
TID=Os.47323.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H11, full insert sequence.
FL= gb:AK108170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4557011/11transcription activator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45540Os.6053.1.S1_at11/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45540Os.51333.1.S1_at10/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein
LOC_Os02g45570Os.47323.1.S1_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45570Os.47323.1.S1_x_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45600Os.35377.1.S1_a_at11/112+27738383..27741375rac GTPase activating protein, putative, expressed
LOC_Os02g45610OsAffx.23593.1.S1_s_at1/112+27743304..27743714hypothetical protein
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47323.1.S1_at--762--4891Chr02:27722547..27722678 (25 bp)
GCTTCCCTTCCCTGGCAGTGATGGG
LOC_Os02g45570
Os.47323.1.S1_at--118--7911Chr02:27722678..27722702 (25 bp)
GGTTGGGGAACCTGTGCTTCGACTA
LOC_Os02g45570
Os.47323.1.S1_at--1056--8511Chr02:27722714..27722738 (25 bp)
TGGAGCCGGACCCAGGGCGGTGCAG
LOC_Os02g45570
Os.47323.1.S1_at--97--2371Chr02:27722835..27722859 (25 bp)
AAAGCCTGTGGAAGCCTCCGCGGCC
LOC_Os02g45570
Os.47323.1.S1_at--451--1771Chr02:27722944..27722968 (25 bp)
ACCTGACCAGTGACCAGACCGGCGC
LOC_Os02g45570
Os.47323.1.S1_at--303--8771Chr02:27722974..27722998 (25 bp)
TGTTTGTTTGTCTCGGCGCATGGGA
LOC_Os02g45570
Os.47323.1.S1_at--897--10351Chr02:27723041..27723065 (25 bp)
TTTTTCCTCGCAACTTTTGAAGCCA
LOC_Os02g45570
Os.47323.1.S1_at--842--10651Chr02:27723044..27723068 (25 bp)
TTCCTCGCAACTTTTGAAGCCAAAA
LOC_Os02g45570
Os.47323.1.S1_at--454--5411Chr02:27723059..27723083 (25 bp)
GAAGCCAAAACAATTCTCACCGTGT
LOC_Os02g45570
Os.47323.1.S1_at--297--4391Chr02:27723062..27723086 (25 bp)
GCCAAAACAATTCTCACCGTGTTCG
LOC_Os02g45570
Os.47323.1.S1_at--621--2411Chr02:27723066..27723090 (25 bp)
AAACAATTCTCACCGTGTTCGATGG
LOC_Os02g45570
Target Sequence 
GCTTCCCTTCCCTGGCAGTGATGGGGTTGGGGAACCTGTGCTTCGACTACCGGAGCAGCATGGAGCCGGACCCAGGGCGG
TGCAGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTACTGCGAGCGGCACGTCCA
CCGCGGACGCGGCCGTTCAAGAAAGCCTGTGGAAGCCTCCGCGGCCGNCACCCCGGCGAACAACGGNGGCGGCGGTGGCA
TCGTCTTCTCCCCCACCAGCGTCCTCCTCGCCCACGGCNCCGNGCGCGCCACCTGACCAGTGACCAGACCGGCGCCNGTT
TGTTTGTTTGTCTCGGCGCATGGGAAAANCCAAANCCGCAGGGATTATGTNATGTCNTGNTAACTCTTNNTTTTTCCTCG
CAACTTTTGAAGCCAAAACAATTCTCACCGTGTTCGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis