Browse Element(s) Details


OsAffx.24740.1.S1_x_at

Description tigr:9629.m06059
TID=OsAffx.24740.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6154011/11hypothetical protein
LOC_Os02g456203/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed
LOC_Os01g61590Os.12649.2.S1_x_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61590Os.12649.1.S1_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24740.1.S1_x_at--932--10592Chr02:27745909..27745933 (25 bp)
TTCTGCGCGAGCTCAGCGAGCTGGA
LOC_Os02g45620
OsAffx.24740.1.S1_x_at--649--5892Chr02:27745926..27745950 (25 bp)
GAGCTGGAGCAGAGCGTCGCGTCGT
LOC_Os02g45620
OsAffx.24740.1.S1_x_at--1111--5591Chr01:35922142..35922166 (25 bp)
GACAAGAAGCACTCGCCGCCGTCGT
LOC_Os01g61540
OsAffx.24740.1.S1_x_at--1074--7111Chr01:35922165..35922189 (25 bp)
GTCATCGCCGTTGCCATCACAGGAG
LOC_Os01g61540
OsAffx.24740.1.S1_x_at--833--531Chr01:35922168..35922192 (25 bp)
ATCGCCGTTGCCATCACAGGAGGAC
LOC_Os01g61540
OsAffx.24740.1.S1_x_at--1039--4231Chr01:35922172..35922196 (25 bp)
CCGTTGCCATCACAGGAGGACAGGA
LOC_Os01g61540
OsAffx.24740.1.S1_x_at--743--3411Chr01:35922210..35922234 (25 bp)
CAGCAACGGCGATGCCACGGACAAA
LOC_Os01g61540
OsAffx.24740.1.S1_x_at--946--6312Chr02:27746058..27746082 (25 bp)
GATGCCACGGACAAACCAGGAGACT
LOC_Os02g45620
OsAffx.24740.1.S1_x_at--49--2371Chr01:35922232..35922256 (25 bp)
AAACCAGGAGACTGCCGTGACGGCG
LOC_Os01g61540
OsAffx.24740.1.S1_x_at--94--6071Chr01:35922325..35922349 (25 bp)
GAGTTCCGGCAGTCTGAGCGAGCCA
LOC_Os01g61540
OsAffx.24740.1.S1_x_at--64--2233Chr10:18841094..18841117 (24 bp)
ACAAGATCGTGGTTGGGCCCTCGGC
NONE
Target Sequence 
TTCTGCGCGAGCTCAGCGAGCTGGAGCAGAGCGTCGCGTCGTGGGGCCGGAAGAGCCACCACCAGAACCACGACAAGAAG
CACTCGCCGCCGTCGTCATCGCCGTTGCCATCACAGGAGGACAGGAAGGAGAAGAACGGCAGCAACGGCGATGCCACGGA
CAAACCAGGAGACTGCCGTGACGGCGACGATGGCGTCGGTGTGGGGCTCGACGGCAGCGTGGCGGTGGTGAAGCAGTCCG
ACGACCCGCTGGGCGAGTTCCGGCAGTCTGAGCGAGCCAGGCGCCGACGTGGTCCTAGCACTCCTCGGCGGGTTCCCCTT
CGTCGCCACACCGACGCTGCTACAAGATCGTGGTTGGGCCCTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24740.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis