Browse Element(s) Details


Os.12649.1.S1_at

Description gb:AK058494.1
DB_XREF= gi:32968512
TID=Os.12649.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calcium-dependent protein kinase (P0460C04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E06, full insert sequence.
FL= gb:AK058494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6159011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed
LOC_Os01g61590Os.12649.2.S1_x_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61590Os.12649.1.S1_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61610Os.31778.1.S1_x_at10/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61610Os.31778.2.S1_x_at8/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12649.1.S1_at--1071--591Chr01:35952361..35952385 (25 bp)
ATGCGTGTAGTTTAGGCCTTTGGGC
LOC_Os01g61590
Os.12649.1.S1_at--225--8431Chr01:35952375..35952399 (25 bp)
GGCCTTTGGGCTCGCTAAGCAGAAA
LOC_Os01g61590
Os.12649.1.S1_at--453--9571Chr01:35952413..35952437 (25 bp)
TCTTCTCATGATTATTTTGCGTGGA
LOC_Os01g61590
Os.12649.1.S1_at--182--1271Chr01:35952443..35952467 (25 bp)
AGATAGGTGGAACCTCCCGATTGGC
LOC_Os01g61590
Os.12649.1.S1_at--511--3791Chr01:35952456..35952480 (25 bp)
CTCCCGATTGGCTTACCTGTGTAAT
LOC_Os01g61590
Os.12649.1.S1_at--272--9971Chr01:35952469..35952493 (25 bp)
TACCTGTGTAATTAGCTCATCTGAC
LOC_Os01g61590
Os.12649.1.S1_at--590--9611Chr01:35952485..35952509 (25 bp)
TCATCTGACAAGCACGCGCCGAATG
LOC_Os01g61590
Os.12649.1.S1_at--191--1511Chr01:35952495..35952519 (25 bp)
AGCACGCGCCGAATGATATACCAAA
LOC_Os01g61590
Os.12649.1.S1_at--1016--231Chr01:35952510..35952534 (25 bp)
ATATACCAAATGCTGTGCGCCTGCT
LOC_Os01g61590
Os.12649.1.S1_at--753--9971Chr01:35952563..35952587 (25 bp)
TACCTGATGCCAAGTGTTGTACAAT
LOC_Os01g61590
Os.12649.1.S1_at--438--6631Chr01:35952578..35952602 (25 bp)
GTTGTACAATGTTTTGCCGTGTTCA
LOC_Os01g61590
Target Sequence 
ATGCGTGTAGTTTAGGCCTTTGGGCTCGCTAAGCAGAAACCCTTTCTCCTTTTCTTCTCATGATTATTTTGCGTGGAAAT
TTAGATAGGTGGAACCTCCCGATTGGCTTACCTGTGTAATTAGCTCATCTGACAAGCACGCGCCGAATGATATACCAAAT
GCTGTGCGCCTGCTTAGCCCTNGTGGCCTTGTTCCTATGGGGTACCTGATGCCAAGTGTTGTACAATGTTTTGCCGTGTT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis