Browse Element(s) Details


Os.35966.1.S1_at

Description gb:AK064727.1
DB_XREF= gi:32974745
TID=Os.35966.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.24 (P0446G04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A02, full insert sequence.
FL= gb:AK064727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6157011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed
LOC_Os01g61590Os.12649.2.S1_x_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61590Os.12649.1.S1_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35966.1.S1_at--54--1231Chr01:35934281..35934305 (25 bp)
AGTTCATGTTCTGGGACTCTGTCCA
LOC_Os01g61570
Os.35966.1.S1_at--1067--331Chr01:35934321..35934345 (25 bp)
ATACAAAGCTGTCGCTGACCACTTC
LOC_Os01g61570
Os.35966.1.S1_at--930--1691Chr01:35934338..35934362 (25 bp)
ACCACTTCCTGCGAACTAACATGTT
LOC_Os01g61570
Os.35966.1.S1_at--992--4791Chr01:35934415..35934439 (25 bp)
GCTCTGAAAGGTTTGTACGCACTGT
LOC_Os01g61570
Os.35966.1.S1_at--82--3631Chr01:35934481..35934505 (25 bp)
CTTCGTCTTCAATGCAACGCTTTAC
LOC_Os01g61570
Os.35966.1.S1_at--132--10351Chr01:35934501..35934525 (25 bp)
TTTACTTGCAACCATTACCGACCTG
LOC_Os01g61570
Os.35966.1.S1_at--1127--3571Chr01:35934513..35934537 (25 bp)
CATTACCGACCTGAATTGCTGTTGC
LOC_Os01g61570
Os.35966.1.S1_at--461--3871Chr01:35934531..35934555 (25 bp)
CTGTTGCTAGTTGTGCACTGGCTTT
LOC_Os01g61570
Os.35966.1.S1_at--375--10351Chr01:35934554..35934578 (25 bp)
TTTTTTATCAGGCTTCTTGGGTTTG
LOC_Os01g61570
Os.35966.1.S1_at--369--2711Chr01:35934617..35934641 (25 bp)
AAGCACTTTATCTCTACATACCATG
LOC_Os01g61570
Os.35966.1.S1_at--295--2731Chr01:35934683..35934707 (25 bp)
AAGAATTAAGCCATCCCTCGTGTAA
LOC_Os01g61570
Target Sequence 
AGTTCATGTTCTGGGACTCTGTCCATCCGACGCAAGCCACATACAAAGCTGTCGCTGACCACTTCCTGCGAACTAACATG
TTGCAGTTCGATGATTAAATGTGGCTTAATTAATGCCACAACTTACTAGCAGTAGCTCTGAAAGGTTTGTACGCACTGTG
ACAGTACTTATAGTACATCTTTGAAGACCAACCATTGCAACTTCGTCTTCAATGCAACGCTTTACTTGCAACCATTACCG
ACCTGAATTGCTGTTGCTAGTTGTGCACTGGCTTTTTTTATCAGGCTTCTTGGGTTTGTTTGGTTTACGGTCTAAGAGCA
AATACTATAAGTTTGTAAGCACTTTATCTCTACATACCATGTAGATTTATTTACTGTTGTGGAAGAGAGAAGAGATGAAA
GAAAGAATTAAGCCATCCCTCGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis