Browse Element(s) Details


OsAffx.23884.1.S1_at

Description tigr:9629.m06057
TID=OsAffx.23884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6152011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23884.1.S1_at--335--3512Chr08:14020885..14020909 (23 bp)
CATGGTGCTGGAGTCTGGAGGCTGT
NONE
OsAffx.23884.1.S1_at--259--4011Chr01:35917737..35917761 (25 bp)
CGTGCGGCGCCTGTGAGAAAATTGC
LOC_Os01g61520
OsAffx.23884.1.S1_at--360--4711Chr01:35917734..35917758 (25 bp)
GCGGCGCCTGTGAGAAAATTGCATA
LOC_Os01g61520
OsAffx.23884.1.S1_at--74--22513Chr08:8411590..8411614 (25 bp)
AAATTGCATATCTACCATCCCATAA
NONE
OsAffx.23884.1.S1_at--219--49511Chr08:8411595..8411619 (25 bp)
GCATATCTACCATCCCATAAGAATG
NONE
OsAffx.23884.1.S1_at--356--43110Chr08:8411609..8411633 (25 bp)
CCATAAGAATGGCTTCGCTAGAATA
NONE
OsAffx.23884.1.S1_at--416--9891Chr01:35917677..35917701 (25 bp)
TACTATTATGAAAACGGGCTTCGCT
LOC_Os01g61520
OsAffx.23884.1.S1_at--118--2396Chr04:30067284..30067308 (25 bp)
AAACGGGCTTCGCTGGAATACCATC
NONE
OsAffx.23884.1.S1_at--419--8737Chr06:29496365..29496389 (25 bp)
TGTCTTCGCCAAAATGCCATCCCGG
NONE
OsAffx.23884.1.S1_at--296--4373Chr06:29496373..29496397 (25 bp)
CCAAAATGCCATCCCGGACGGAAAT
NONE
OsAffx.23884.1.S1_at--1020--9192Chr06:29496379..29496403 (25 bp)
TGCCATCCCGGACGGAAATGCCCAT
NONE
Target Sequence 
CATGGTGCTGGAGTCTGGAGGCTGTGAGCGCGAGTGTGAGGAGTCCGGGCGTGCGGCGCCTGTGAGAAAATTGCATATCT
ACCATCCCATAAGAATGGCTTCGCTAGAATACTATTATGAAAACGGGCTTCGCTGGAATACCATCCTCAACCAGAGTGTC
TTCGCCAAAATGCCATCCCGGACGGAAATGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis