Browse Element(s) Details


Os.15134.1.S1_at

Description gb:AK061265.1
DB_XREF= gi:32971283
TID=Os.15134.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.23 (P0446G04.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C06, full insert sequence.
FL= gb:AK061265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6156011/11phosphatidate cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed
LOC_Os01g61590Os.12649.2.S1_x_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61590Os.12649.1.S1_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0004605molecular_functionphosphatidate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15134.1.S1_at--1121--7691Chr01:35928654..35928678 (25 bp)
GGGTCCACTGTATTATGCTACCACT
LOC_Os01g61560
Os.15134.1.S1_at--1076--1691Chr01:35928635..35928659 (25 bp)
ACCACTATAACTTTTGCCACTTCTA
LOC_Os01g61560
Os.15134.1.S1_at--141--8071Chr01:35928604..35928628 (25 bp)
GGAGAACCTCTCCAATCGCTATAGC
LOC_Os01g61560
Os.15134.1.S1_at--143--9351Chr01:35928589..35928613 (25 bp)
TCGCTATAGCCCTTATTTGCAACTT
LOC_Os01g61560
Os.15134.1.S1_at--766--5111Chr01:35928359..35928383 (25 bp)
GCACTAGCTGGTTTCATGGCTTCAA
LOC_Os01g61560
Os.15134.1.S1_at--335--9891Chr01:35928243..35928267 (25 bp)
TACTTCCAGTCATTCGGTTTCATTG
LOC_Os01g61560
Os.15134.1.S1_at--150--2691Chr01:35928214..35928238 (25 bp)
AAGCTGGTCCTTGGCTTTTGGCTTC
LOC_Os01g61560
Os.15134.1.S1_at--986--2551Chr01:35928175..35928199 (25 bp)
AACTGCAGCACTTGTAGAGTCCCAT
LOC_Os01g61560
Os.15134.1.S1_at--649--7971Chr01:35928133..35928157 (25 bp)
GGATGACAACTTGACTGTTCCTTTA
LOC_Os01g61560
Os.15134.1.S1_at--1068--1231Chr01:35928097..35928121 (25 bp)
AGTTGGTAGCCTTGTTTTCTGATGT
LOC_Os01g61560
Os.15134.1.S1_at--900--9151Chr01:35927983..35928007 (25 bp)
TGCCCACTGGTACTTTTACCAACTA
LOC_Os01g61560
Target Sequence 
GGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTA
TTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCC
AACAAGTCATATGCAGGCAGCATAGCAATGGCACTAGCTGGTTTCATGGCTTCAATTGGGNTATATGCATTACTTCCAGT
CATTCGGTTTCATTGANGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCC
CATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATG
TTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCCAATGGTA
TGAACAAAATTGCCCACTGGTACTTTTACCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis