Browse Element(s) Details


Os.20681.1.S1_x_at

Description gb:AK070208.1
DB_XREF= gi:32980232
TID=Os.20681.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.18 (P0446G04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047C12, full insert sequence.
FL= gb:AK070208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6150011/11BCL-2 binding anthanogene-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61480Os.38423.1.S1_at11/111+35884997..35886074Transcription factor LAX PANICLE, putative, expressed
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20681.1.S1_x_at--932--3191Chr01:35910558..35910582 (25 bp)
CAATGAGTTCCTGCATACAGCTGGG
LOC_Os01g61500
Os.20681.1.S1_x_at--1098--7991Chr01:35910588..35910612 (25 bp)
GGATGGAGCAAAACTTCTTCTACTT
LOC_Os01g61500
Os.20681.1.S1_x_at--207--6651Chr01:35910715..35910737 (23 bp)
GTTGACAGACTCTCTGCCAAGGTAT
LOC_Os01g61500
Os.20681.1.S1_x_at--935--6631Chr01:35910888..35910912 (25 bp)
GTTGTCTTGACGGAGCTTCTTATGA
LOC_Os01g61500
Os.20681.1.S1_x_at--822--1811Chr01:35912161..35912185 (25 bp)
ACGCCGTGTCCAAGGTCTTGTGGAG
LOC_Os01g61500
Os.20681.1.S1_x_at--582--2751Chr01:35912206..35912230 (25 bp)
AAGAAATGCCAATCCCTTCAGCGAT
LOC_Os01g61500
Os.20681.1.S1_x_at--26--3051Chr01:35912238..35912262 (25 bp)
AATCTGTTTCAGTGACAACGCAGTG
LOC_Os01g61500
Os.20681.1.S1_x_at--827--8271Chr01:35912279..35912303 (25 bp)
GGCATGGGCAGCTTGAATGCACCCC
LOC_Os01g61500
Os.20681.1.S1_x_at--227--3091Chr01:35912326..35912350 (25 bp)
AATAAACACCGACTGGGAGCAATTC
LOC_Os01g61500
Os.20681.1.S1_x_at--1080--8051Chr01:35912341..35912365 (25 bp)
GGAGCAATTCGACTAGCCTCGGATT
LOC_Os01g61500
Os.20681.1.S1_x_at--301--3791Chr01:35912358..35912382 (25 bp)
CTCGGATTGCGTTTTCTCATTGTAT
LOC_Os01g61500
Target Sequence 
CAATGAGTTCCTGCATACAGCTGGGGTCAAGGATGGAGCAAAACTTCTTCTACTTGAGAAGCCTGCCCCTGCCAATGTAG
AGCAGAGGGCCGAGCCAGTAATTATGGATGAGAGCATGATGAAGGCTTGTGAGGCTGTTGGCCGTGTAAGAGCTGAAGTT
GACAGACTCTCTGCCAAGGTATGTGATTTGGAGAAGAGTGTGTTTGCAGGGAGAAAGATTGAGGATAAAGATTTTGTTGT
CTTGACGGAGCTTCTTATGATGGAGCTGCTGAAACTTGATGGCATAGAGGCAGAGGGAGAAGCAAGGGCACAAAGGAAGG
CTGAGGTACGCCGTGTCCAAGGTCTTGTGGAGACGTTGGATAAGCTGAAGGCAAGAAATGCCAATCCCTTCAGCGATCAA
AACAAATCTGTTTCAGTGACAACGCAGTGGGAGACGTTCGACAATGGCATGGGCAGCTTGAATGCACCCCCACCACGGGT
TTCTTCCACACAAATAAACACCGACTGGGAGCAATTCGACTAGCCTCGGATTGCGTTTTCTCATTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20681.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis