Browse Element(s) Details


Os.38423.1.S1_at

Description gb:AB115668.1
DB_XREF= gi:33342171
GEN=LAX
TID=Os.38423.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38423 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) LAX mRNA for transcription factor, complete cds.
PROD=transcription factor
FL= gb:AB115668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6148011/11Transcription factor LAX PANICLE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein
LOC_Os01g61470OsAffx.23883.1.S1_x_at11/111+35874750..35875319Zinc finger, C3HC4 type family protein
LOC_Os01g61480Os.38423.1.S1_at11/111+35884997..35886074Transcription factor LAX PANICLE, putative, expressed
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38423.1.S1_at--17--5751Chr01:35885580..35885604 (25 bp)
GACGGCCCGGCTCATCAGATGATGC
LOC_Os01g61480
Os.38423.1.S1_at--133--4731Chr01:35885671..35885695 (25 bp)
GCTGTGTCTTCGTCCAGGAGACTGA
LOC_Os01g61480
Os.38423.1.S1_at--151--7311Chr01:35885702..35885726 (25 bp)
GTGCTACTCGGTGTGCAATGTCCAC
LOC_Os01g61480
Os.38423.1.S1_at--420--2131Chr01:35885772..35885796 (25 bp)
ACAGTGGCTTGCTTAGGTAGTTAAT
LOC_Os01g61480
Os.38423.1.S1_at--703--10131Chr01:35885806..35885830 (25 bp)
TATGCTCGAATATTGGCTCTACCCA
LOC_Os01g61480
Os.38423.1.S1_at--174--1611Chr01:35885833..35885857 (25 bp)
AGCTGTCTAGCTCTACTTAGCTTAC
LOC_Os01g61480
Os.38423.1.S1_at--235--9951Chr01:35885850..35885874 (25 bp)
TAGCTTACCTAGGTCGTCAACCAAT
LOC_Os01g61480
Os.38423.1.S1_at--1057--191Chr01:35885875..35885899 (25 bp)
ATATTACCGGTTGGTCATGGTCCCT
LOC_Os01g61480
Os.38423.1.S1_at--1059--7111Chr01:35885888..35885912 (25 bp)
GTCATGGTCCCTTAAATTAGCTAGA
LOC_Os01g61480
Os.38423.1.S1_at--56--5491Chr01:35886030..35886054 (25 bp)
GAACTTGTTTGCTCGATCGCTTAAT
LOC_Os01g61480
Os.38423.1.S1_at--111--531Chr01:35886045..35886069 (25 bp)
ATCGCTTAATTGCTATCTCACCATT
LOC_Os01g61480
Target Sequence 
GACGGCCCGGCTCATCAGATGATGCAGCAAGCGCTCGATCCAGCGGGGCAGCTGATGATGGGCGGCGCTCATCAGCTGCC
TCCTTTGCCTTGCTGTGTCTTCGTCCAGGAGACTGACCCCTCGTGCTACTCGGTGTGCAATGTCCACGGTGAGGAGTCTG
NTNNNCAAGGATCTTATTAGCTAGCTAGTGAGACAGTGGCTTGCTTAGGTAGTTAATTTCCTTAAGTATGCTCGAATATT
GGCTCTACCCACTAGCTGTCTAGCTCTACTTAGCTTACCTAGGTCGTCAACCAATATATTACCGGTTGGTCATGGTCCCT
TAAATTAGCTAGACTCTTGATTTCTGTAAGAATGCATATATGCATGCATGGGGTTCTGTTGGAGCAATGCATAACAGAGC
TTTGTTTTACATGCATGCGTGCATGCTTCCTAGATATCATTCTGAAATCTGAACTTGTTTGCTCGATCGCTTAATTGCTA
TCTCACCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis