Browse Element(s) Details


Os.20681.2.A1_at

Description gb:CF305108
DB_XREF= gi:33676869
DB_XREF=ABF1--06-M24.g1
CLONE=ABF1--06-M24
TID=Os.20681.2
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.18 (P0446G04.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6150011/11BCL-2 binding anthanogene-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61480Os.38423.1.S1_at11/111+35884997..35886074Transcription factor LAX PANICLE, putative, expressed
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20681.2.A1_at--556--91Chr01:35912410..35912434 (25 bp)
ATTCCTTTCACAGGCACACGATTGT
LOC_Os01g61500
Os.20681.2.A1_at--481--4311Chr01:35912413..35912437 (25 bp)
CCTTTCACAGGCACACGATTGTTGT
LOC_Os01g61500
Os.20681.2.A1_at--254--3311Chr01:35912418..35912442 (25 bp)
CACAGGCACACGATTGTTGTGTATA
LOC_Os01g61500
Os.20681.2.A1_at--371--3351Chr01:35912426..35912450 (25 bp)
CACGATTGTTGTGTATATGCAAGAA
LOC_Os01g61500
Os.20681.2.A1_at--124--271Chr01:35912440..35912464 (25 bp)
ATATGCAAGAAGTTTGACGCCTATT
LOC_Os01g61500
Os.20681.2.A1_at--1092--5331Chr01:35912448..35912472 (25 bp)
GAAGTTTGACGCCTATTGCTAACAC
LOC_Os01g61500
Os.20681.2.A1_at--354--6851Chr01:35912451..35912475 (25 bp)
GTTTGACGCCTATTGCTAACACTGC
LOC_Os01g61500
Os.20681.2.A1_at--749--1811Chr01:35912456..35912480 (25 bp)
ACGCCTATTGCTAACACTGCCTGTG
LOC_Os01g61500
Os.20681.2.A1_at--466--10231Chr01:35912461..35912485 (25 bp)
TATTGCTAACACTGCCTGTGCAATG
LOC_Os01g61500
Os.20681.2.A1_at--531--1991Chr01:35912471..35912495 (25 bp)
ACTGCCTGTGCAATGTTATCGAATG
LOC_Os01g61500
Os.20681.2.A1_at--466--3191Chr01:35912481..35912505 (25 bp)
CAATGTTATCGAATGATGCAAGTGA
LOC_Os01g61500
Target Sequence 
ATTCCTTTCACAGGCACACGATTGTTGTGTATATGCAAGAAGTTTGACGCCTATTGCTAACACTGCCTGTGCAATGTTAT
CGAATGATGCAAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20681.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis