Browse Element(s) Details


Os.30296.1.S1_at

Description gb:AK109023.1
DB_XREF= gi:32994232
TID=Os.30296.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ammonium transporter (P0446G04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-B03, full insert sequence.
FL= gb:AK109023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6151011/11Ammonium transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61490OsAffx.32166.1218.S1_x_at2/111+35895500..35903068retrotransposon protein, putative, unclassified
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015696biological_processammonium transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30296.1.S1_at--911--9891Chr01:35914557..35914581 (25 bp)
TACTGGGTAAGATAAGCTCTCGCTT
LOC_Os01g61510
Os.30296.1.S1_at--366--9971Chr01:35914528..35914552 (25 bp)
TACCATTTGCAACGTACGGTCGGTT
LOC_Os01g61510
Os.30296.1.S1_at--459--3971Chr01:35914512..35914536 (25 bp)
CGGTCGGTTGGTTAATTCTGGTCAT
LOC_Os01g61510
Os.30296.1.S1_at--831--3891Chr01:35914495..35914519 (25 bp)
CTGGTCATTGCCTGGTCGGATTTTC
LOC_Os01g61510
Os.30296.1.S1_at--596--7791Chr01:35914482..35914506 (25 bp)
GGTCGGATTTTCTTCACAACTTTTG
LOC_Os01g61510
Os.30296.1.S1_at--238--8571Chr01:35914459..35914483 (25 bp)
TGGTTGTTCGGTTTGTCACGACCCG
LOC_Os01g61510
Os.30296.1.S1_at--712--1891Chr01:35914406..35914430 (25 bp)
ACGGGTCAGGACTTACACGAGTACT
LOC_Os01g61510
Os.30296.1.S1_at--863--7011Chr01:35914386..35914410 (25 bp)
GTACTTGCACCCGTACATTAGCAGT
LOC_Os01g61510
Os.30296.1.S1_at--585--7851Chr01:35914286..35914310 (25 bp)
GGTAGACTAGTCACTTGCGTGTATT
LOC_Os01g61510
Os.30296.1.S1_at--186--2371Chr01:35914206..35914230 (25 bp)
AAACGATTCGATGTAGCTTAGGCTC
LOC_Os01g61510
Os.30296.1.S1_at--1003--3731Chr01:35914177..35914201 (25 bp)
CTAATTTCCTCGTACCTGCAAAAGT
LOC_Os01g61510
Target Sequence 
TACTGGGTAAGATAAGCTCTCGCTTCCTCTACCATTTGCAACGTACGGTCGGTTGGTTAATTCTGGTCATTGCCTGGTCG
GATTTTCTTCACAACTTTTGGTTGTTCGGTTTGTCACGACCCGCCGGGGTTTACTTTTCCGGTGCGCGCTCACGGGTCAG
GACTTACACGAGTACTTGCACCCGTACATTAGCAGTACATGTGACGTGTGGACTTTGTGGTGAAACGTTCGGGGCACGCG
GTCGCGGGAGCACGGAGTCGTCAGCGCCCGGGGTAGACTAGTCACTTGCGTGTATTGATCGAGTGAGACGTGTTTTGGAC
ATGGACGATGGTGAACTAGTACTATGGAAAGAAACGATTCGATGTAGCTTAGGCTCGAGCCTAATTTCCTCGTACCTGCA
AAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis