Browse Element(s) Details


Os.55484.1.S1_x_at

Description gb:AK108178.1
DB_XREF= gi:32993387
TID=Os.55484.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A08, full insert sequence.
FL= gb:AK108178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4562011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g615402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45570Os.47323.1.S1_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45570Os.47323.1.S1_x_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45600Os.35377.1.S1_a_at11/112+27738383..27741375rac GTPase activating protein, putative, expressed
LOC_Os02g45610OsAffx.23593.1.S1_s_at1/112+27743304..27743714hypothetical protein
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed
LOC_Os02g45660Os.49474.1.S1_at8/112+27767582..277696412-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
LOC_Os02g45670OsAffx.2971.1.S1_at11/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45670Os.12484.1.S1_at5/112+27770790..27775529myb family transcription factor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55484.1.S1_x_at--325--5611Chr02:27745980..27746004 (25 bp)
GACAAGAAACACTCGCCGGCGCCGT
LOC_Os02g45620
Os.55484.1.S1_x_at--969--4131Chr02:27746011..27746035 (25 bp)
CGCTGCCGCCACAGGAGGACAGGAA
LOC_Os02g45620
Os.55484.1.S1_x_at--445--8372Chr02:27746055..27746079 (25 bp)
GGCGATGCCACGGACAAACCAGGAG
LOC_Os02g45620
Os.55484.1.S1_x_at--50--2372Chr02:27746070..27746094 (25 bp)
AAACCAGGAGACTGCCGCGACGGCG
LOC_Os02g45620
Os.55484.1.S1_x_at--313--10671Chr02:27746175..27746199 (25 bp)
TTCCGGCAGTCGATGCTGCAGATGA
LOC_Os02g45620
Os.55484.1.S1_x_at--243--3991Chr02:27746451..27746475 (25 bp)
CGGGCATGGCGCGTGTAATCGTAAC
LOC_Os02g45620
Os.55484.1.S1_x_at--843--7391Chr02:27746463..27746487 (25 bp)
GTGTAATCGTAACGCGTACGTGCAA
LOC_Os02g45620
Os.55484.1.S1_x_at--1089--6451Chr02:27746471..27746495 (25 bp)
GTAACGCGTACGTGCAACGCTCGCA
LOC_Os02g45620
Os.55484.1.S1_x_at--302--4571Chr02:27746499..27746523 (25 bp)
GCGCTGTGTAATCACCCGCGATGTG
LOC_Os02g45620
Os.55484.1.S1_x_at--258--9751Chr02:27746507..27746531 (25 bp)
TAATCACCCGCGATGTGGGTTACTC
LOC_Os02g45620
Os.55484.1.S1_x_at--1102--9831Chr02:27746540..27746564 (25 bp)
TACACAAGTACTGCTACTCGATATC
LOC_Os02g45620
Target Sequence 
GACAAGAAACACTCGCCGGCGCCGTCGTCGCCGCTGCCGCCACAGGAGGACAGGAAGGAGAAGAACGGCGGCAACGGCGA
TGCCACGGACAAACCAGGAGACTGCCGCGACGGCGGCGGCGGCGGCGACGGCGTCGGTGTGGCTCTCGACGGCAGCGTGG
CGGTGGTGAAGCAGTCCGACGACCCGCTGGGCGACTTCCGGCAGTCGATGCTGCAGATGATCGTGGAGAACGGGATCGTC
GCCGGCGAGGACCTCCGCGAGATGCTCCGCCGCTTCCTCACCCTCAACGCGCCGCACCACCACGACGTCATCCTCCGCGC
CTTCGCCGAGATCTGGGACGGCGTGTTCGCGGCTACTGCCTCCCTCGTCCACCACCACCACCCGCCCCCCTCCTCACGCC
GCGAGCCGGTGGCTCCGGCGGCAAGGCCGCCCGCGCCGAGGACGCCTCCGCGCCACCGCCACCCTTCACCACGGGCATGG
CGCGTGTAATCGTAACGCGTACGTGCAACGCTCGCACGCGCGCTGTGTAATCACCCGCGATGTGGGTTACTCCGGGGCAA
TACACAAGTACTGCTACTCGATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55484.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis