Browse Element(s) Details


Os.13475.1.S1_at

Description gb:AK102210.1
DB_XREF= gi:32987419
TID=Os.13475.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087I04, full insert sequence.
FL= gb:AK102210.1 gb:AK060498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4565010/11Peptidase family M48 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45600Os.35377.1.S1_a_at11/112+27738383..27741375rac GTPase activating protein, putative, expressed
LOC_Os02g45610OsAffx.23593.1.S1_s_at1/112+27743304..27743714hypothetical protein
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed
LOC_Os02g45660Os.49474.1.S1_at8/112+27767582..277696412-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
LOC_Os02g45670OsAffx.2971.1.S1_at11/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45670Os.12484.1.S1_at5/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45680NANA2+27778351..27786356retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005783cellular_componentendoplasmic reticulum
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13475.1.S1_at--556--1351Chr02:27764394..27764418 (25 bp)
AGAGAACTTATCTGCAATGAACACA
LOC_Os02g45650
Os.13475.1.S1_at--1043--8891Chr02:27764622..27764646 (25 bp)
TGAGAAGTACTGTAAGCGTTCAAAC
LOC_Os02g45650
Os.13475.1.S1_at--524--4631Chr02:27764637..27764661 (25 bp)
GCGTTCAAACATTTATCATACAGGG
LOC_Os02g45650
Os.13475.1.S1_at--860--5451Chr02:27764662..27764686 (25 bp)
GAACGTTGGCAACTATGTAGCTCTC
LOC_Os02g45650
Os.13475.1.S1_at--299--5151Chr02:27764670..27764694 (25 bp)
GCAACTATGTAGCTCTCGATTAAGA
LOC_Os02g45650
Os.13475.1.S1_at--1035--6551Chr02:27764687..27764711 (25 bp)
GATTAAGATAGTTTGCCTTCCATTA
LOC_Os02g45650
Os.13475.1.S1_at--343--9191Chr02:27764700..27764724 (25 bp)
TGCCTTCCATTAATTGGCTTACAGA
LOC_Os02g45650
Os.13475.1.S1_at--156--31Chr02:27764712..27764736 (25 bp)
ATTGGCTTACAGATATTGACATATA
LOC_Os02g45650
Os.13475.1.S1_at--320--7031Chr02:27764846..27764870 (25 bp)
GTACATGTCAGTGTATTCTCCTACT
LOC_Os02g45650
Os.13475.1.S1_at--714--6851Chr02:27764858..27764882 (25 bp)
GTATTCTCCTACTACTTTCGACAAG
LOC_Os02g45650
Os.13475.1.S1_at--82--2871Chr02:27764889..27764913 (25 bp)
AAGTGAATCAGCTATTGAAATGTTC
NONE
Target Sequence 
AGAGAACTTATCTGCAATGAACACAGATCCGTGGTATTCAGCCTACCACTACTCCCATCCACCCCTTGTTGAAAGGCTCT
CTGCTCTTGAAGACGCAGACAGCAAAAAGGAAAACTAACGGAAAGTTGATCCACNTGAAACACCGAAGTCTTTACTCTTC
CATGGGTTACCTTACGGTGTCATGGAATCGTTTCAATGTTCGGGATGTTAATGGAATGTGTGAGTACATGAGAAGTACTG
TAAGCGTTCAAACATTTATCATACAGGGGAACGTTGGCAACTATGTAGCTCTCGATTAAGATAGTTTGCCTTCCATTAAT
TGGCTTACAGATATTGACATATACTCCTTCCATTTCACAATGTAAGTTATTCTAGCATTTTCCACATTCATATTGATGTA
TTAATATGAATGTGGGAAATGCTAGAATGACTTGCATTGTAAAACGGAGGAAGTACATGTCAGTGTATTCTCCTACTACT
TTCGACAAGAAATAGAAGTGAATCAGCTATTGAAATGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis