Browse Element(s) Details


Os.35377.1.S1_a_at

Description gb:AY364311.1
DB_XREF= gi:34451567
TID=Os.35377.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35377 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Rho GTPase activating protein 2 mRNA, complete cds.
PROD=Rho GTPase activating protein 2
FL= gb:AY364311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4560011/11rac GTPase activating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein
LOC_Os02g45570Os.47323.1.S1_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45570Os.47323.1.S1_x_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45600Os.35377.1.S1_a_at11/112+27738383..27741375rac GTPase activating protein, putative, expressed
LOC_Os02g45610OsAffx.23593.1.S1_s_at1/112+27743304..27743714hypothetical protein
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030675molecular_functionRac GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35377.1.S1_a_at--1032--1351Chr02:27740766..27740790 (25 bp)
AGAGCATTTGGACAAGCCCACCATT
LOC_Os02g45600
Os.35377.1.S1_a_at--845--4531Chr02:27740781..27740805 (25 bp)
GCCCACCATTTGTTCAACTCAGCAA
LOC_Os02g45600
Os.35377.1.S1_a_at--282--9591Chr02:27740838..27740862 (25 bp)
TCTTGATCACTTCCTCTTTAGAGCA
LOC_Os02g45600
Os.35377.1.S1_a_at--317--7831Chr02:27740890..27740914 (25 bp)
GGTAGTGCTGGACGACCCAAGAAAC
LOC_Os02g45600
Os.35377.1.S1_a_at--541--8211Chr02:27740946..27740970 (25 bp)
GGAATTTTCTCCCATAGATAGTGAT
LOC_Os02g45600
Os.35377.1.S1_a_at--504--10071Chr02:27740964..27740988 (25 bp)
TAGTGATTCAAGTAGCCAAGCCAGC
LOC_Os02g45600
Os.35377.1.S1_a_at--683--5031Chr02:27741071..27741095 (25 bp)
GCAGACACCCTGTTTTTCAGTTGAG
LOC_Os02g45600
Os.35377.1.S1_a_at--743--5411Chr02:27741118..27741142 (25 bp)
GAAGCGGGACAAGCCTGTGTATGAA
LOC_Os02g45600
Os.35377.1.S1_a_at--1044--2631Chr02:27741213..27741237 (25 bp)
AACCATTGTCCTAGATTTCGTGAGT
LOC_Os02g45600
Os.35377.1.S1_a_at--668--2531Chr02:27741281..27741305 (25 bp)
AACTACTGATGTCGAGTTCCTGCCT
LOC_Os02g45600
Os.35377.1.S1_a_at--459--4071Chr02:27741293..27741317 (25 bp)
CGAGTTCCTGCCTGTATATTTCAAC
LOC_Os02g45600
Target Sequence 
AGAGCATTTGGACAAGCCCACCATTTGTTCAACTCAGCAAAATAATGATTTTCCAATGATTAGTGGGGCTACTCTTGATC
ACTTCCTCTTTAGAGCAGAACCATTGCGTCATAATGACGCACAAGGTAGTGCTGGACGACCCAAGAAACGCGACAATAAG
GACCATGACAACAGCAGCAGGGAATTTTCTCCCATAGATAGTGATTCAAGTAGCCAAGCCAGCAATTCTGCAAGCAAATT
CAGTAATGACAATGTGGAAGGTTTATTTGACAGATTTAAATTTCGGAAAGGAGTAGGGAGGCTGTGCAGACACCCTGTTT
TTCAGTTGAGTAGGTCCATGAAAAAATCAGGTGAAGCGGGACAAGCCTGTGTATGAAGTAATGACACGATAGGGTGTAGT
TGATAGTTTCCATTATTTTTAGAGGCATGTTTACTTAACATTTCATCAACCATTGTCCTAGATTTCGTGAGTAGAACTGT
AGAAGGTATTAGCCAATTTGGTGGTAGTAGTACTGAACTACTGATGTCGAGTTCCTGCCTGTATATTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35377.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis