Browse Element(s) Details


OsAffx.12510.2.A1_at

Description tigr:9630.m04421
TID=OsAffx.12510.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=69434-67986
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4559010/11DUF17 domain PF|01535 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45540Os.6053.1.S1_at11/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45540Os.51333.1.S1_at10/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein
LOC_Os02g45570Os.47323.1.S1_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45570Os.47323.1.S1_x_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein
LOC_Os02g45590Os.57037.1.S1_at11/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45590OsAffx.12510.2.A1_at10/112+27729978..27735070DUF17 domain PF|01535 containing protein, putative, expressed
LOC_Os02g45600Os.35377.1.S1_a_at11/112+27738383..27741375rac GTPase activating protein, putative, expressed
LOC_Os02g45610OsAffx.23593.1.S1_s_at1/112+27743304..27743714hypothetical protein
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12510.2.A1_at--433--6751NONE
GTTCATGTTCAACCAGCACCATATC
NONE
OsAffx.12510.2.A1_at--937--7491Chr02:27731438..27731462 (25 bp)
GTGGTCCTATGATGAGTCCAACTGC
LOC_Os02g45590
OsAffx.12510.2.A1_at--582--8831Chr02:27731319..27731427 (25 bp)
TGATTATTGTCTTTGAGCGGGCTCC
LOC_Os02g45590
OsAffx.12510.2.A1_at--309--5891Chr02:27731305..27731329 (25 bp)
GAGCGGGCTCCTACAGAGATTTTTT
LOC_Os02g45590
OsAffx.12510.2.A1_at--1150--6491Chr02:27731246..27731270 (25 bp)
GATAGGTTCCAAAGCTGTGTACCAA
LOC_Os02g45590
OsAffx.12510.2.A1_at--474--2751Chr02:27730227..27730251 (25 bp)
AAGAAAATCTCAATCTACCGCCACT
LOC_Os02g45590
OsAffx.12510.2.A1_at--442--591Chr02:27730197..27730221 (25 bp)
ATGCCTGGCCATTAGCCTGAAGGTC
LOC_Os02g45590
OsAffx.12510.2.A1_at--795--2951Chr02:27730147..27730171 (25 bp)
AAGGCCACAGAGCTCCAGTAGTCAT
LOC_Os02g45590
OsAffx.12510.2.A1_at--287--10651Chr02:27730097..27730121 (25 bp)
TTCCCAGGAGCCGATCATGTTGATG
LOC_Os02g45590
OsAffx.12510.2.A1_at--6--6511Chr02:27730055..27730079 (25 bp)
GATAGGGCATCTGAGCATCTCTACA
LOC_Os02g45590
OsAffx.12510.2.A1_at--714--8911Chr02:27730044..27730068 (25 bp)
TGAGCATCTCTACATCTGCACAGGT
LOC_Os02g45590
Target Sequence 
GTTCATGTTCAACCAGCACCATATCAGTTTTAAAAGTACTCATAGGTGGTCCTATGATGAGTCCAACTGCAAATATCACT
TGATTATTGTCTTTGAGCGGGCTCCTACAGAGATTTTTTCTTTATCTCTACTAGTGCAATTGCAGTTTGGAATGATAGGT
TCCAAAGCTGTGTACCAAATGATTTATGGTGACTGGAAAGTACTGGCCACAGTGTCAAGAAAATCTCAATCTACCGCCAC
TGCACCATGCCTGGCCATTAGCCTGAAGGTCGGTGTATTTGGAGTGCGAGTATTGCAAGGCCACAGAGCTCCAGTAGTCA
TTGATTTGGCCAAGTCAATATTGATATTCCCAGGAGCCGATCATGTTGATGCGCTGCTAAAGAAGACAGATAGGGCATCT
GAGCATCTCTACATCTGCACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12510.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis