Browse Element(s) Details


Os.49474.1.S1_at

Description gb:AK060238.1
DB_XREF= gi:32970256
TID=Os.49474.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D03, full insert sequence.
FL= gb:AK060238.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g456608/112-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45610OsAffx.23593.1.S1_s_at1/112+27743304..27743714hypothetical protein
LOC_Os02g45620Os.55484.1.S1_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620Os.55484.1.S1_x_at11/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45620OsAffx.24740.1.S1_x_at3/112+27745597..27746564uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os02g45630OsAffx.2969.1.S1_at11/112+27749030..27752902hypothetical protein
LOC_Os02g45630OsAffx.17955.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45630Os.54455.1.S1_at1/112+27749030..27752902hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_x_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.2.S1_at5/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.23890.4.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22005.1.S1_x_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45640OsAffx.22811.1.S1_at1/112+27754280..27756131hypothetical protein
LOC_Os02g45650Os.13475.1.S1_at10/112+27758787..27764901Peptidase family M48 containing protein, expressed
LOC_Os02g45660Os.49474.1.S1_at8/112+27767582..277696412-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
LOC_Os02g45670OsAffx.2971.1.S1_at11/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45670Os.12484.1.S1_at5/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45680NANA2+27778351..27786356retrotransposon protein, putative, unclassified
LOC_Os02g45690Os.6297.1.S1_at11/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45690OsAffx.22034.1.S1_at1/112+27792179..27797855Mechanosensitive ion channel family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019288biological_processisopentenyl diphosphate biosynthesis, mevalonate-independent pathway
GO:0008685molecular_function2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49474.1.S1_at--658--8951Chr02:27768971..27768995 (25 bp)
TGACATCGGGCAGATCTTCCCGGAC
LOC_Os02g45660
Os.49474.1.S1_at--588--4231Chr02:27768924..27768948 (25 bp)
CCGATTCGTCGGTGTTCATGAGGGA
LOC_Os02g45660
Os.49474.1.S1_at--46--5551Chr02:27767972..27767996 (25 bp)
GAAACTGATGCATGAAGCTGGCTAT
LOC_Os02g45660
Os.49474.1.S1_at--717--1391NONE
AGACGCTACGTTGATCTTGCAGAAA
NONE
Os.49474.1.S1_at--159--9011Chr02:27767916..27767940 (25 bp)
TGCAGAAACCCAAAATTAGCCCATT
LOC_Os02g45660
Os.49474.1.S1_at--134--6371Chr02:27767848..27767872 (25 bp)
GATCCATCCGTCGTCAATCTGAAGG
LOC_Os02g45660
Os.49474.1.S1_at--100--1551Chr02:27767782..27767806 (25 bp)
AGCATAGCTGCTCACACTGTAGTTC
LOC_Os02g45660
Os.49474.1.S1_at--489--3311Chr02:27767770..27767794 (25 bp)
CACACTGTAGTTCTTCTGATGCGGA
LOC_Os02g45660
Os.49474.1.S1_at--7--3451Chr02:27767604..27767628 (25 bp)
CAGATTGTGTCTTGACTGTTTCACA
LOC_Os02g45660
Os.49474.1.S1_at--325--5891NONE
GAGCGTCCGCTGCTAACATCAGAAT
NONE
Os.49474.1.S1_at--117--1451NONE
AGAATGCCTCGTGCCGATTAAGCCT
NONE
Target Sequence 
TGACATCGGGCAGATCTTCCCGGACTCCGACCCCCGTTGGAAGGGCGCCGATTCGTCGGTGTTCATGAGGGAAGCTGTGA
AACTGATGCATGAAGCTGGCTATGAGCTGGGGAACCTAGACGCTACGTTGATCTTGCAGAAACCCAAAATTAGCCCATTC
AAGGAGACAATACGGTCTAACTTGTGTGACTTGCTGGGGGCGGATCCATCCGTCGTCAATCTGAAGGCCAAGACGCACGA
NAAAGTCGACAGTCTTGGTGAAAACAGGAGCATAGCTGCTCACACTGTAGTTCTTCTGATGCGGAAATAGGAAAATGGAA
GTGTACTACATATTACAGGAATTGAATTGTAACATAGTGAACAAATTGTCCTTATGTAAGTGGTTTATCACTGAAATTTT
AGGGCAAAAANCAATANNAAACNCGAGTGCAATGTAAAATTTTATGTNTCCAGATTGTGTCTTGACTGTTTCACAANTGA
ACATTANAATTTTATGGCAGCATGCTGAGGTTGGAGCGTCCGCTGCTAACATCAGAATGCCTCGTGCCGATTAAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis