Browse Element(s) Details


Os.6297.1.S1_at

Description gb:AK103328.1
DB_XREF= gi:32988537
TID=Os.6297.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125M22, full insert sequence.
FL= gb:AK103328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4569011/11Mechanosensitive ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45660Os.49474.1.S1_at8/112+27767582..277696412-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
LOC_Os02g45670OsAffx.2971.1.S1_at11/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45670Os.12484.1.S1_at5/112+27770790..27775529myb family transcription factor, putative, expressed
LOC_Os02g45680NANA2+27778351..27786356retrotransposon protein, putative, unclassified
LOC_Os02g45690Os.6297.1.S1_at11/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45690OsAffx.22034.1.S1_at1/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45700Os.6297.2.S1_at10/112+27797544..27799762fringe protein, putative, expressed
LOC_Os02g45710Os.7028.1.S1_at11/112+27801192..27802223Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45720Os.47463.1.S1_x_at6/112+27810607..27814307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45720Os.14491.2.S1_x_at4/112+27810607..27814307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45730NANA2+27817142..27820446transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6297.1.S1_at--429--8831Chr02:27796169..27796193 (25 bp)
TGATTAACCCAGAAAACCTCCCTGT
LOC_Os02g45690
Os.6297.1.S1_at--624--6631Chr02:27796192..27796216 (25 bp)
GTTGTAGTTCCTAACTCACTGTTCT
LOC_Os02g45690
Os.6297.1.S1_at--793--2511Chr02:27796492..27796516 (25 bp)
AACATTGATGCTCCTTACTGCTATC
LOC_Os02g45690
Os.6297.1.S1_at--852--9911Chr02:27796507..27796531 (25 bp)
TACTGCTATCTCTCACGGTTAGAAA
LOC_Os02g45690
Os.6297.1.S1_at--1015--8031Chr02:27796540..27796564 (25 bp)
GGAGAGCTTACCATTGGTTGCAACA
LOC_Os02g45690
Os.6297.1.S1_at--922--311Chr02:27797595..27797619 (25 bp)
ATACGAATCTTGAACTTGCGAGCAC
LOC_Os02g45690
Os.6297.1.S1_at--699--9151Chr02:27797611..27797635 (25 bp)
TGCGAGCACATTACAGTTCTGTTCT
LOC_Os02g45690
Os.6297.1.S1_at--1137--531Chr02:27797636..27797660 (25 bp)
ATCCCTCTCCATTTTACTGCGAGAA
LOC_Os02g45690
Os.6297.1.S1_at--274--6731Chr02:27797720..27797744 (25 bp)
GTTCTCATGTCCCATACTCTAATGT
LOC_Os02g45690
Os.6297.1.S1_at--841--8691Chr02:27797755..27797779 (25 bp)
TGTGCCATATGCCTTTCCTATTTAA
LOC_Os02g45690
Os.6297.1.S1_at--133--951Chr02:27797779..27797803 (25 bp)
AGGAAGTGACCCTTTGTCATCCTAC
LOC_Os02g45690
Target Sequence 
TGATTAACCCAGAAAACCTCCCTGTTGTAGTTCCTAACTCACTGTTCTCCAGCCAAATTATAGTCAATAAATCAAGAGCT
GTGTGGCGTGCTAGNGTGGTAAAAATTCCTGTTATAATTGAAGACCTTGAAAAGATTCCTACTATATCAGAGGAGATAAA
AGTGAAGTTAAGGTCCAACCCAAACATTGATGCTCCTTACTGCTATCTCTCACGGTTAGAAAGTTCACATGGAGAGCTTA
CCATTGGTTGCAACATCAAAAGCATGAGAAGAGACGAATGGACAACAGTGGAACAAGATATTCTNTTGAAAGCTGCCAGC
ATTGTCAAGCAATACGAATCTTGAACTTGCGAGCACATTACAGTTCTGTTCTATCCCTCTCCATTTTACTGCGAGAAGAG
GTTAAAGTGGTTACTCTTTTTCTAGTTTGGTATGGGTATATGGGACTGTAAATAGAGTTCTCATGTCCCATACTCTAATG
TTTTGATCACATGTGCCATATGCCTTTCCTATTTAAGGAAGTGACCCTTTGTCATCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis