Browse Element(s) Details


Os.7028.1.S1_at

Description gb:AK099314.1
DB_XREF= gi:32984523
TID=Os.7028.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150J15, full insert sequence.
FL= gb:AK071853.1 gb:AK099314.1 gb:AK104122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4571011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45680NANA2+27778351..27786356retrotransposon protein, putative, unclassified
LOC_Os02g45690Os.6297.1.S1_at11/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45690OsAffx.22034.1.S1_at1/112+27792179..27797855Mechanosensitive ion channel family protein, expressed
LOC_Os02g45700Os.6297.2.S1_at10/112+27797544..27799762fringe protein, putative, expressed
LOC_Os02g45710Os.7028.1.S1_at11/112+27801192..27802223Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45720Os.47463.1.S1_x_at6/112+27810607..27814307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45720Os.14491.2.S1_x_at4/112+27810607..27814307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45730NANA2+27817142..27820446transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45740NANA2+27825552..27826577hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010200biological_processresponse to chitin
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7028.1.S1_at--1110--9071Chr02:27801513..27801537 (25 bp)
TGCTCAACGGCTTGGGCGGTTTCCA
LOC_Os02g45710
Os.7028.1.S1_at--1015--7811Chr02:27801464..27801488 (25 bp)
GGTCAATTTCGTTGCAACCGGCATG
LOC_Os02g45710
Os.7028.1.S1_at--337--2631Chr02:27801449..27801473 (25 bp)
AACCGGCATGACAGAGCTGCCTCAA
LOC_Os02g45710
Os.7028.1.S1_at--387--9711Chr02:27801428..27801452 (25 bp)
TCAACTACGGCACACGGGCACATAG
LOC_Os02g45710
Os.7028.1.S1_at--777--3551Chr02:27801408..27801432 (25 bp)
CATAGGCGTCCTGATTTGTACATAG
LOC_Os02g45710
Os.7028.1.S1_at--58--9891Chr02:27801390..27801414 (25 bp)
TACATAGGCGCCAAGGAGAACTCCC
LOC_Os02g45710
Os.7028.1.S1_at--584--231Chr02:27801331..27801355 (25 bp)
ATATAGGTCGATTCCACCTTCCAAG
LOC_Os02g45710
Os.7028.1.S1_at--1007--2651Chr02:27801309..27801333 (25 bp)
AAGCCTGCGAAGTTGTGAATCCTTT
LOC_Os02g45710
Os.7028.1.S1_at--1057--2711Chr02:27801246..27801270 (25 bp)
AAGCAGAGCAGTGCCACAGTTTGGT
LOC_Os02g45710
Os.7028.1.S1_at--1065--2131Chr02:27801231..27801255 (25 bp)
ACAGTTTGGTGCTTGCTAATTTGGC
LOC_Os02g45710
Os.7028.1.S1_at--249--8511Chr02:27801210..27801234 (25 bp)
TGGCAAGCCGTTTAATCCAATCTCC
LOC_Os02g45710
Target Sequence 
TGCTCAACGGCTTGGGCGGTTTCCAGTGAGCCCGCCAATCCACCGCCCCGGTCAATTTCGTTGCAACCGGCATGACAGAG
CTGCCTCAACTACGGCACACGGGCACATAGGCGTCCTGATTTGTACATAGGCGCCAAGGAGAACTCCCCCCAAAAAAACA
CAAGTAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCCAAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGCAG
ATTACTAGTAGTATATTAAATTTGTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAGCCGTTTAATC
CAATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis