Browse Element(s) Details


Os.4905.3.S1_a_at

Description gb:AK060017.1
DB_XREF= gi:32970035
TID=Os.4905.3
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.25 (P0446G04.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G02, full insert sequence.
FL= gb:AK060017.1 gb:AK120744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6158011/11SelT-like protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61500Os.20681.1.S1_x_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61500Os.20681.2.A1_at11/111+35909129..35912547BCL-2 binding anthanogene-1, putative, expressed
LOC_Os01g61510Os.30296.1.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61510Os.30296.2.S1_x_at11/111+35912999..35915226Ammonium transporter 2, putative, expressed
LOC_Os01g61520OsAffx.23884.1.S1_at11/111+35917585..35918016hypothetical protein
LOC_Os01g61530NANA1+35919882..35920307hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540OsAffx.24740.1.S1_x_at11/111+35921791..35922621hypothetical protein
LOC_Os01g61540Os.55484.1.S1_x_at2/111+35921791..35922621hypothetical protein
LOC_Os01g61550Os.33005.1.S1_at11/111+35923942..35925867Ammonium transporter 2, putative, expressed
LOC_Os01g61560Os.15134.1.S1_at11/111+35927908..35930841phosphatidate cytidylyltransferase family protein, expressed
LOC_Os01g61570Os.35966.1.S1_at11/111+35932554..35934746GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed
LOC_Os01g61590Os.12649.2.S1_x_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61590Os.12649.1.S1_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61610Os.31778.1.S1_x_at10/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61610Os.31778.2.S1_x_at8/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4905.3.S1_a_at--529--9911Chr01:35937956..35937980 (25 bp)
TACTCGCTCCGTGCTAATAGATTTG
LOC_Os01g61580
Os.4905.3.S1_a_at--652--8471Chr01:35937914..35937938 (25 bp)
TGGCTGTTTGGCAATTTCGCCCAGT
LOC_Os01g61580
Os.4905.3.S1_a_at--837--10631Chr01:35937899..35937923 (25 bp)
TTCGCCCAGTCATTTCTACAAAGTT
LOC_Os01g61580
Os.4905.3.S1_a_at--539--6531Chr01:35936831..35936855 (25 bp)
GATTTCCCAGCGAGTTTGAGCTACG
LOC_Os01g61580
Os.4905.3.S1_a_at--669--9931Chr01:35936810..35936834 (25 bp)
TACGGGAGCTCATTGGCAACAGGTT
LOC_Os01g61580
Os.4905.3.S1_a_at--106--1011Chr01:35936790..35936814 (25 bp)
AGGTTACCAGATTCTCAATTCGGGA
LOC_Os01g61580
Os.4905.3.S1_a_at--582--6651Chr01:35936737..35936761 (25 bp)
GTTGATGTCAAGAGAGCCCACTTCA
LOC_Os01g61580
Os.4905.3.S1_a_at--772--4171Chr01:35936721..35936745 (25 bp)
CCCACTTCATTTACCTGCTATTTAA
LOC_Os01g61580
Os.4905.3.S1_a_at--855--631Chr01:35936654..35936678 (25 bp)
ATGCTATTTGTCTTCTTCTTTTGTG
LOC_Os01g61580
Os.4905.3.S1_a_at--400--6171Chr01:35936522..35936546 (25 bp)
GAGGATGTGAACCATAACGCCCCTT
LOC_Os01g61580
Os.4905.3.S1_a_at--739--4531Chr01:35936504..35936528 (25 bp)
GCCCCTTCTCGAGTATTCCTAATTA
LOC_Os01g61580
Target Sequence 
TACTCGCTCCGTGCTAATAGATTTGGAACAATGGCAACAATCTGGCTGTTTGGCAATTTCGCCCAGTCATTTCTACAAAG
TTCTGGTGCCTTTGAAGTTTACTGCAATGGACAATTGGTTTTCTCAAAATTATCCGAACAGAGATTTCCCAGCGAGTTTG
AGCTACGGGAGCTCATTGGCAACAGGTTACCAGATTCTCAATTCGGGAAAAATCTGGAAAAGGTTTGGTCATAGATGTTG
ATGTCAAGAGAGCCCACTTCATTTACCTGCTATTTAATTGATAGAACCGCTTGAAAGTTTACGCCTAATTGTCAATCACA
TGCTATTTGTCTTCTTCTTTTGTGAAGGCAGGTACTTTTCTTTTTGTTGTAAATAATGTTTTACCCTCGCAAAGAAAGTG
AAGGAGTTCTGTGGCTATGTTAGTTTGTTAGAACTGTCATATTTACTCAAAGAGGATGTGAACCATAACGCCCCTTCTCG
AGTATTCCTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4905.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis