Browse Element(s) Details


Os.31778.2.S1_x_at

Description gb:NM_190455.1
DB_XREF= gi:34907993
GEN=P0460C04.6
TID=Os.31778.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31778 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) leucoanthocyanidin dioxygenase-like protein (P0460C04.6), mRNA.
PROD=leucoanthocyanidin dioxygenase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g616108/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61580Os.4905.3.S1_a_at11/111+35936466..35939943SelT-like protein precursor, putative, expressed
LOC_Os01g61590Os.12649.2.S1_x_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61590Os.12649.1.S1_at11/111+35946589..35952629Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os01g61610Os.31778.1.S1_x_at10/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61610Os.31778.2.S1_x_at8/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61620Os.14313.2.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.2.S1_x_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.1.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61630Os.38044.1.S1_at11/111+35985593..35987794pentatricopeptide, putative, expressed
LOC_Os01g61640Os.19412.1.S1_at11/111+35987935..35990748NLI interacting factor-like phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31778.2.S1_x_at--816--1791Chr01:35967264..35967288 (25 bp)
ACCGCGTGATCGTGAACGCCGAGGA
LOC_Os01g61610
Os.31778.2.S1_x_at--936--10571Chr01:35967311..35967335 (25 bp)
TTCTACAACCCGAGAGGCGACGTCC
LOC_Os01g61610
Os.31778.2.S1_x_at--957--6931Chr01:35967418..35967442 (25 bp)
GTACGTCAGGAAGAATGGCCCCAAG
LOC_Os01g61610
Os.31778.2.S1_x_at--437--9711Chr01:35967465..35967489 (25 bp)
TCAAGGGCCAGTCAATCACCCAAAA
LOC_Os01g61610
Os.31778.2.S1_x_at--202--9731Chr01:35967523..35967547 (25 bp)
TAATTAAGCTACACCGATCGATCCA
LOC_Os01g61610
Os.31778.2.S1_x_at--1109--10411Chr01:35967612..35967636 (25 bp)
TTATCCCATGTATGATCTGAATCGG
LOC_Os01g61610
Os.31778.2.S1_x_at--863--6991Chr01:35967659..35967683 (25 bp)
GTACATGGCCTACTTAATTTACGCA
LOC_Os01g61610
Os.31778.2.S1_x_at--757--5111NONE
GCACATATATATTGCACGCCTGCGT
NONE
Os.31778.2.S1_x_at--510--3831Chr01:35967736..35967759 (24 bp)
CTGCGTGCTCACTATCTGAAGTATA
LOC_Os01g61610
Os.31778.2.S1_x_at--270--271Chr01:35967768..35967792 (25 bp)
ATATGTAATTCAGGGACGCGATGCT
NONE
Os.31778.2.S1_x_at--944--3451Chr01:35967778..35967802 (25 bp)
CAGGGACGCGATGCTAATTAGTAAT
NONE
Target Sequence 
ACCGCGTGATCGTGAACGCCGAGGAGGAGCGCATCTCGCTCGCACTCTTCTACAACCCGAGAGGCGACGTCCCGGTGGCG
CCGGCGCCGGAGCTGGTGACGCCGGAGCGGCNGTCGCTCTACTACCGTCCGATGACCTTCGACGAGTACAGGNTGTACGT
CAGGAAGAATGGCCCCAAGGGCAANGCACAGCTTGAGGCTCTCAAGGGCCAGTCAATCACCCAAAACAACGAATAATAAA
TAATTAGTAATTAATTAACTAATTAAGCTACACCGATCGATCCAACAGCGACGGCATGCTAATNCCATGGATCGAACTAG
CNAAGCTAGCTAGCTAGCNNAGTCAGCNATTAATTATCCCATGTATGATCTGAATCGGAATAACACATGCATGAGTGTGT
GTACATGGCCTACTTAATTTACGCANACNATNATATAGTTNATNNAGGNCCTTAATTATNTNATAAGCACATATATATTG
CACGCCTGCGTGCTCACTATCTGAAGTATATATGCATTATATGTAATTCAGGGACGCGATGCTAATTAGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31778.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis