Browse Element(s) Details


Os.14313.1.S1_s_at

Description gb:AK068489.1
DB_XREF= gi:32978507
TID=Os.14313.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Ser-Thr protein kinase-like (P0460C04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155B12, full insert sequence.
FL= gb:AK068489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6162011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61610Os.31778.1.S1_x_at10/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61610Os.31778.2.S1_x_at8/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61620Os.14313.2.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.2.S1_x_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.1.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61630Os.38044.1.S1_at11/111+35985593..35987794pentatricopeptide, putative, expressed
LOC_Os01g61640Os.19412.1.S1_at11/111+35987935..35990748NLI interacting factor-like phosphatase family protein, expressed
LOC_Os01g61650Os.28943.1.S1_x_at2/111+35996748..35999884retrotransposon protein, putative, unclassified
LOC_Os01g61660NANA1+36000515..36006468retrotransposon protein, putative, unclassified
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14313.1.S1_s_at--642--10791Chr01:35984900..35984924 (25 bp)
TTGTTCAACTGCTCCTAAGCTGGAT
LOC_Os01g61620
Os.14313.1.S1_s_at--449--6751Chr01:35984902..35984926 (25 bp)
GTTCAACTGCTCCTAAGCTGGATCC
LOC_Os01g61620
Os.14313.1.S1_s_at--642--9091Chr01:35984909..35984933 (25 bp)
TGCTCCTAAGCTGGATCCCTGCAAT
LOC_Os01g61620
Os.14313.1.S1_s_at--1001--9791Chr01:35984915..35984939 (25 bp)
TAAGCTGGATCCCTGCAATCTTCTA
LOC_Os01g61620
Os.14313.1.S1_s_at--303--3911Chr01:35984919..35984943 (25 bp)
CTGGATCCCTGCAATCTTCTAAAGA
LOC_Os01g61620
Os.14313.1.S1_s_at--885--7971Chr01:35984921..35984945 (25 bp)
GGATCCCTGCAATCTTCTAAAGATG
LOC_Os01g61620
Os.14313.1.S1_s_at--288--10491Chr01:35984992..35985016 (25 bp)
TTACACTTTCCTTGAGTTTTAGAAG
LOC_Os01g61620
Os.14313.1.S1_s_at--321--2911Chr01:35985014..35985038 (25 bp)
AAGGATTTACCTTTGTGCTTGCTGA
LOC_Os01g61620
Os.14313.1.S1_s_at--708--7911Chr01:35985016..35985040 (25 bp)
GGATTTACCTTTGTGCTTGCTGAAC
LOC_Os01g61620
Os.14313.1.S1_s_at--540--10451Chr01:35985020..35985044 (25 bp)
TTACCTTTGTGCTTGCTGAACTAGC
LOC_Os01g61620
Os.14313.1.S1_s_at--411--3691Chr01:35985024..35985048 (25 bp)
CTTTGTGCTTGCTGAACTAGCATGC
LOC_Os01g61620
Target Sequence 
TTGTTCAACTGCTCCTAAGCTGGATCCCTGCAATCTTCTAAAGATGGATTGATTTTCTGATGTTTCCCCATGAGTCCATG
ACATGAAACATTTTACACTTTCCTTGAGTTTTAGAAGGATTTACCTTTGTGCTTGCTGAACTAGCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14313.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis