Browse Element(s) Details

Os.19412.1.S1_at

Description

gb:AK068946.1
DB_XREF= gi:32978970
TID=Os.19412.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0460C04.11 (P0460C04.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001J01, full insert sequence.
FL= gb:AK068946.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g61640	11/11	NLI interacting factor-like phosphatase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g61610	Os.31778.1.S1_x_at	10/11	1	+	35963152..35967782	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61610	Os.31778.2.S1_x_at	8/11	1	+	35963152..35967782	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61620	Os.14313.2.S1_s_at	11/11	1	+	35980035..35985226	protein kinase family protein, putative, expressed
LOC_Os01g61620	Os.14313.2.S1_x_at	11/11	1	+	35980035..35985226	protein kinase family protein, putative, expressed
LOC_Os01g61620	Os.14313.1.S1_s_at	11/11	1	+	35980035..35985226	protein kinase family protein, putative, expressed
LOC_Os01g61630	Os.38044.1.S1_at	11/11	1	+	35985593..35987794	pentatricopeptide, putative, expressed
LOC_Os01g61640	Os.19412.1.S1_at	11/11	1	+	35987935..35990748	NLI interacting factor-like phosphatase family protein, expressed
LOC_Os01g61650	Os.28943.1.S1_x_at	2/11	1	+	35996748..35999884	retrotransposon protein, putative, unclassified
LOC_Os01g61660	NA	NA	1	+	36000515..36006468	retrotransposon protein, putative, unclassified
LOC_Os01g61670	Os.11151.1.S1_a_at	10/11	1	+	36009166..36012603	expressed protein
LOC_Os01g61680	Os.28176.1.S1_at	11/11	1	+	36013258..36014645	expressed protein
LOC_Os01g61680	Os.28176.2.S1_x_at	7/11	1	+	36013258..36014645	expressed protein
LOC_Os01g61690	Os.8355.1.S1_a_at	11/11	1	+	36014911..36018483	Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000775	cellular_component	chromosome, pericentric region
GO:0005634	cellular_component	nucleus
GO:0005694	cellular_component	chromosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.19412.1.S1_at--573--709	1	Chr01:35988590..35988614 (25 bp)	GTCAAAGATCTTTCTTGCGTGTCAA	LOC_Os01g61640
Os.19412.1.S1_at--778--881	1	Chr01:35988543..35988567 (25 bp)	TGTTGACAACAACCCATTCAGTTTC	LOC_Os01g61640
Os.19412.1.S1_at--770--523	1	Chr01:35988499..35988523 (25 bp)	GAATACCCTGTGTTCCATTTTCAGC	LOC_Os01g61640
Os.19412.1.S1_at--657--205	1	Chr01:35988351..35988375 (25 bp)	ACTTCTGAAGCATCTCTCTATCCAG	LOC_Os01g61640
Os.19412.1.S1_at--876--601	1	Chr01:35988325..35988349 (25 bp)	GAGATGTTAGACCAGCACTATACGA	LOC_Os01g61640
Os.19412.1.S1_at--621--743	1	Chr01:35988242..35988266 (25 bp)	GTGTAAATTTTGCAGCCGCTACATG	LOC_Os01g61640
Os.19412.1.S1_at--287--767	1	Chr01:35988164..35988188 (25 bp)	GGGATAGCACCTGTACATTATTATT	LOC_Os01g61640
Os.19412.1.S1_at--624--9	1	Chr01:35988134..35988158 (25 bp)	ATTCGTTTAGGTTTCCTGGATCCTG	LOC_Os01g61640
Os.19412.1.S1_at--740--101	1	Chr01:35988094..35988118 (25 bp)	AGGTTCGTACAGAATTGCCATGTCT	LOC_Os01g61640
Os.19412.1.S1_at--111--125	1	Chr01:35988000..35988024 (25 bp)	AGTTGTATATCACCTTCTGTTGTAA	LOC_Os01g61640
Os.19412.1.S1_at--479--115	1	Chr01:35987951..35987975 (25 bp)	AGTCTAATTGGTATGCTGCCAGCAT	LOC_Os01g61640

Target Sequence

GTCAAAGATCTTTCTTGCGTGTCAAAAGATTTCTGCAGAGTTGTCATTGTTGACAACAACCCATTCAGTTTCATATTGCA
ACCTTTGAATGGAATACCCTGTGTTCCATTTTCAGCTGGACAACATAATGATAATCAGCTCATGGAAGTTATATTTCCAC
TTCTGAAGCATCTCTCTATCCAGAGAGATGTTAGACCAGCACTATACGAAAGATTTCATATGCCTGAATGGTTCCAAAAA
CATGGCATCCCCCAAACTGATCAGGCAGTGTAAATTTTGCAGCCGCTACATGAAATTGTTTTGATGAAGGCTGAAACGCC
TGCCACGCCATAAGTCCGTTCTCAGGGGATAGCACCTGTACATTATTATTTATATATTCGTTTAGGTTTCCTGGATCCTG
ATAAAAATCAAGTCAAGGTTCGTACAGAATTGCCATGTCTGAAGANAAAAGGAATTGTAATCTAGCAGAATGTTAGATTG
GTATNTGTGTAGTGGGGCATTTAAACACCAGTTGTATATCACCTTCTGTTGTAAAANNTCATNGTTGATAGTTCAGTTAG
TCTAATTGGTATGCTGCCAGCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis