Browse Element(s) Details


Os.28176.1.S1_at

Description gb:AK072813.1
DB_XREF= gi:32982836
TID=Os.28176.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0460C04.15 (P0460C04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141C24, full insert sequence.
FL= gb:AK072813.1 gb:AK106052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6168011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61640Os.19412.1.S1_at11/111+35987935..35990748NLI interacting factor-like phosphatase family protein, expressed
LOC_Os01g61650Os.28943.1.S1_x_at2/111+35996748..35999884retrotransposon protein, putative, unclassified
LOC_Os01g61660NANA1+36000515..36006468retrotransposon protein, putative, unclassified
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein
LOC_Os01g61680Os.28176.1.S1_at11/111+36013258..36014645expressed protein
LOC_Os01g61680Os.28176.2.S1_x_at7/111+36013258..36014645expressed protein
LOC_Os01g61690Os.8355.1.S1_a_at11/111+36014911..36018483Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g61700NANA1+36019649..36020635ATP-dependent Clp protease adaptor protein ClpS containing protein
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28176.1.S1_at--526--3671Chr01:36014099..36014123 (25 bp)
CTTTACCCTATGACGATTCTGCTGT
LOC_Os01g61680
Os.28176.1.S1_at--443--6571Chr01:36014113..36014137 (25 bp)
GATTCTGCTGTAGCCTGTCATCTCT
LOC_Os01g61680
Os.28176.1.S1_at--80--5031Chr01:36014162..36014186 (25 bp)
GCAGTCTTGGAATTCGCATTGGGAG
LOC_Os01g61680
Os.28176.1.S1_at--149--1071Chr01:36014216..36014240 (25 bp)
AGGGATCGCCATGGCAGTGAGCTTT
LOC_Os01g61680
Os.28176.1.S1_at--229--1171Chr01:36014270..36014294 (25 bp)
AGTCACCTTTGCTGTCTGTAGTAGA
LOC_Os01g61680
Os.28176.1.S1_at--769--2831Chr01:36014382..36014406 (25 bp)
AAGTTTGCTGTATGTGGCTTGGCCC
LOC_Os01g61680
Os.28176.1.S1_at--858--8491Chr01:36014396..36014420 (25 bp)
TGGCTTGGCCCTATTGAGTTTGTAC
LOC_Os01g61680
Os.28176.1.S1_at--812--6091Chr01:36014453..36014477 (25 bp)
GAGTCATCTTGCTTTACTGGTATGT
LOC_Os01g61680
Os.28176.1.S1_at--122--1211Chr01:36014482..36014506 (25 bp)
AGTTTCTCTACACGGATTCTTCATT
LOC_Os01g61680
Os.28176.1.S1_at--792--7671Chr01:36014525..36014549 (25 bp)
GGGTTGTTGCATTGTGTCAGTTACT
LOC_Os01g61680
Os.28176.1.S1_at--202--3111Chr01:36014601..36014625 (25 bp)
AATAGGCATGTATCTTCAGTTTTGT
LOC_Os01g61680
Target Sequence 
CTTTACCCTATGACGATTCTGCTGTAGCCTGTCATCTCTTCCGGCCCGGTTGAATTTGCTGCTGCAGTCTTGGAATTCGC
ATTGGGAGTGCAAAAAGGGTGATATTGCAGTCAAGGAAGGGATCGCCATGGCAGTGAGCTTTTGGAAGGGTTTGATACCA
TCATGATCTTGAGTCACCTTTGCTGTCTGTAGTAGACTAGTAGTGCTTTTCTTTTCTTCTGTGAATTGGTGGGAGTATAC
ACTGGTTGTTAATTTTTGGATCTGTTAATATTGGAAAATGACAAAGTTTGCTGTATGTGGCTTGGCCCTATTGAGTTTGT
ACCATCTCATGAGGTTCATAGGGGTTGCAATTTTGAGTCATCTTGCTTTACTGGTATGTCTTAAGTTTCTCTACACGGAT
TCTTCATTAGTCTTCTAAGAAAGCATGGGTTGTTGCATTGTGTCAGTTACTGAATATAAATTCTCTGTTAAACTTTAAAT
TATAGTCTTTTGGTTTTCCAGAAATAGGCATGTATCTTCAGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis