Browse Element(s) Details


Os.28176.2.S1_x_at

Description gb:NM_190463.1
DB_XREF= gi:34908009
GEN=P0460C04.15
TID=Os.28176.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0460C04.15 (P0460C04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0460C04.15 (P0460C04.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g616807/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61640Os.19412.1.S1_at11/111+35987935..35990748NLI interacting factor-like phosphatase family protein, expressed
LOC_Os01g61650Os.28943.1.S1_x_at2/111+35996748..35999884retrotransposon protein, putative, unclassified
LOC_Os01g61660NANA1+36000515..36006468retrotransposon protein, putative, unclassified
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein
LOC_Os01g61680Os.28176.1.S1_at11/111+36013258..36014645expressed protein
LOC_Os01g61680Os.28176.2.S1_x_at7/111+36013258..36014645expressed protein
LOC_Os01g61690Os.8355.1.S1_a_at11/111+36014911..36018483Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g61700NANA1+36019649..36020635ATP-dependent Clp protease adaptor protein ClpS containing protein
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28176.2.S1_x_at--620--5111Chr01:36012965..36012989 (25 bp)
GCACAGTCGCGGTCATACGGGCGAA
NONE
Os.28176.2.S1_x_at--898--10071Chr01:36013052..36013076 (25 bp)
TAGGAAAATTATTCGCGGCTTTGGC
NONE
Os.28176.2.S1_x_at--907--10231Chr01:36013071..36013095 (25 bp)
TTTGGCCTCCAAATTCCTCTCGCAA
NONE
Os.28176.2.S1_x_at--119--4331NONE
CCATTATCCGGCCTGCTGCGGATAC
NONE
Os.28176.2.S1_x_at--154--6471Chr01:36013693..36013717 (25 bp)
GATACTGCGGGTACGCGCTGAACCT
LOC_Os01g61680
Os.28176.2.S1_x_at--358--8991Chr01:36013711..36013735 (25 bp)
TGAACCTGAGCTCGTCGACGCGGAA
LOC_Os01g61680
Os.28176.2.S1_x_at--237--8171Chr01:36013732..36013756 (25 bp)
GGAACACGGCGAACATCGGGTCCAA
LOC_Os01g61680
Os.28176.2.S1_x_at--768--2091Chr01:36013744..36013768 (25 bp)
ACATCGGGTCCAAGTACGGGAAGCA
LOC_Os01g61680
Os.28176.2.S1_x_at--763--1871Chr01:36013804..36013828 (25 bp)
ACGAGAGCCGGTTCACGCAGGCCGA
LOC_Os01g61680
Os.28176.2.S1_x_at--875--5071Chr01:36014020..36014044 (25 bp)
GCAGCGCGTCGAGCCAGAAGAACTA
LOC_Os01g61680
Os.28176.2.S1_x_at--67--8851Chr01:36014047..36014071 (25 bp)
TGATCAAGATCAACGCGCTGCAGCC
LOC_Os01g61680
Target Sequence 
GCACAGTCGCGGTCATACGGGCGAACGCGGTGGAAGATCCAGGCCGAGGACGATGGCGCGACGTCGGCCCCCAGGCTCAA
AAAAATATAGGAAAATTATTCGCGGCTTTGGCCTCCAAATTCCTCTCGCAAGCGCCACGTTTCCCCGACGTCCACGTCCA
TTATCCGGCCTGCTGCGGATACTGCGGGTACGCGCTGAACCTGAGCTCGTCGACGCGGAACACGGCGAACATCGGGTCCA
AGTACGGGAAGCAGATCAAGAAGGGGGTCGTCTCCTTCTTCGCGGTGGACGAGAGCCGGTTCACGCAGGCCGACGAGGTC
ACCTGCGTGCCCTACTTCCACTCGCGGCGCTCCTGGGGGCTCTTCCGGCGGAGGTCGCGGCTGCTGTGCCGGAAGTGCGG
CGGCCGCATCGGCAGCGCCTACGAGGAGGACGAACCCGCCGCCGCGGCGCTGCCCGCGTGCGACGGCCCGGACGACCTGC
GCACCACGAGCTCCGGGAGCAGCGGCAGCGCGTCGAGCCAGAAGAACTACGTGATCAAGATCAACGCGCTGCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28176.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis