Browse Element(s) Details


Os.38044.1.S1_at

Description gb:AK067226.1
DB_XREF= gi:32977244
TID=Os.38044.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0460C04.10 (P0460C04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098M23, full insert sequence.
FL= gb:AK067226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6163011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61610Os.31778.1.S1_x_at10/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61610Os.31778.2.S1_x_at8/111+35963152..35967782oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g61620Os.14313.2.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.2.S1_x_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61620Os.14313.1.S1_s_at11/111+35980035..35985226protein kinase family protein, putative, expressed
LOC_Os01g61630Os.38044.1.S1_at11/111+35985593..35987794pentatricopeptide, putative, expressed
LOC_Os01g61640Os.19412.1.S1_at11/111+35987935..35990748NLI interacting factor-like phosphatase family protein, expressed
LOC_Os01g61650Os.28943.1.S1_x_at2/111+35996748..35999884retrotransposon protein, putative, unclassified
LOC_Os01g61660NANA1+36000515..36006468retrotransposon protein, putative, unclassified
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38044.1.S1_at--213--10731Chr01:35987233..35987257 (25 bp)
TTGTTCGCAAAGAGCCGGAGGCACC
LOC_Os01g61630
Os.38044.1.S1_at--827--8051Chr01:35987313..35987337 (25 bp)
GGAGACGATCGCCATCACGATGAAT
LOC_Os01g61630
Os.38044.1.S1_at--489--6351Chr01:35987402..35987426 (25 bp)
GATGCGTCTTCTCAGACAGGGTGCA
LOC_Os01g61630
Os.38044.1.S1_at--527--2131Chr01:35987417..35987441 (25 bp)
ACAGGGTGCACTTCCAGATGGTCAG
LOC_Os01g61630
Os.38044.1.S1_at--372--7371Chr01:35987489..35987513 (25 bp)
GTGAGCTTAGCGATGACCCGAGCAT
LOC_Os01g61630
Os.38044.1.S1_at--723--1331Chr01:35987519..35987543 (25 bp)
AGAGGGAGCTTTACCTTGTGGCTGC
LOC_Os01g61630
Os.38044.1.S1_at--244--6111Chr01:35987575..35987599 (25 bp)
GAGTCGTCACAGATTATCAGCCAGA
LOC_Os01g61630
Os.38044.1.S1_at--681--9791Chr01:35987600..35987624 (25 bp)
TAAGAAGCCCCAACGCCATTGGTGT
LOC_Os01g61630
Os.38044.1.S1_at--771--3792Chr01:35987645..35987669 (25 bp)
CTCCAGTTTCTCTGACGACAAATTC
LOC_Os01g61630
Os.38044.1.S1_at--385--3151Chr01:35987665..35987689 (25 bp)
AATTCAGGTGTATTGCCAGACAGCA
LOC_Os01g61630
Os.38044.1.S1_at--535--7051Chr01:35987724..35987748 (25 bp)
GTAACTTGTAAGTGCGCGTGGCCAC
LOC_Os01g61630
Target Sequence 
TTGTTCGCAAAGAGCCGGAGGCACCGGAGTGTGATCGAGGTGTTCGACGAAATGAGGAAGGCGGGGTCTTTGCCGGACTC
GGAGACGATCGCCATCACGATGAATGCTCATGGTAAGCTGAAGGAGTTCGACAAGGCGGCGGCGCTGTACCGGGCGATGA
GGGAGGAAGGATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCGCCCAGAAGGACTTCGACGCG
CTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCATCGACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTA
CGAGAGAGCATGCAAGTTTGATGAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGT
TCAGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATACACACCATAGTGTNNTTGAC
AATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis