Browse Element(s) Details


OsAffx.12509.2.S1_at

Description tigr:9630.m04415
TID=OsAffx.12509.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GMC oxidoreductase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4553011/11HOTHEAD protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class
LOC_Os02g45520Os.18559.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45520OsAffx.12508.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45540Os.6053.1.S1_at11/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45540Os.51333.1.S1_at10/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein
LOC_Os02g45570Os.47323.1.S1_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45570Os.47323.1.S1_x_at11/112+27721988..27723091transcription activator, putative, expressed
LOC_Os02g45580NANA2+27726030..27726398hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12509.2.S1_at--630--1231Chr02:27698775..27698799 (25 bp)
AGTTCCCGGCGAACCTGATGCGCAT
LOC_Os02g45530
OsAffx.12509.2.S1_at--95--1231Chr02:27698832..27698856 (25 bp)
AGTTCTGCCGGGACACCGTCATGAC
LOC_Os02g45530
OsAffx.12509.2.S1_at--1060--4591Chr02:27698904..27698928 (25 bp)
GCGACTACCGTGTGCTCGGCATCGA
LOC_Os02g45530
OsAffx.12509.2.S1_at--79--3371Chr02:27698989..27699009 (21 bp)
CACCGTCATGATGCTTGGCAGATTG
LOC_Os02g45530
OsAffx.12509.2.S1_at--415--10751Chr02:27699835..27699859 (25 bp)
TTGAAGCCTCCAATCACTCTGAAAT
LOC_Os02g45530
OsAffx.12509.2.S1_at--747--1211Chr02:27699861..27700026 (25 bp)
AGTTACTCTTTGCATGGACCTTCAG
LOC_Os02g45530
OsAffx.12509.2.S1_at--511--3411Chr02:27700564..27700588 (25 bp)
CAGAATGCTCGAGCCTTCGATCAAA
LOC_Os02g45530
OsAffx.12509.2.S1_at--36--5572Chr02:27700593..27700617 (25 bp)
GAAAGCTGTGGAGTCGCTCGTTGCA
LOC_Os02g45530
OsAffx.12509.2.S1_at--696--8032Chr02:27700602..27700626 (25 bp)
GGAGTCGCTCGTTGCAGACATTAAA
LOC_Os02g45530
OsAffx.12509.2.S1_at--916--5171Chr02:27702154..27702178 (25 bp)
GCAAGTGTCGGGTTTATCTTCAAGG
LOC_Os02g45530
OsAffx.12509.2.S1_at--179--10831Chr02:27702190..27702214 (25 bp)
TTGGTGCTACTTGCCGACCACAAAG
LOC_Os02g45530
Target Sequence 
AGTTCCCGGCGAACCTGATGCGCATGCGCGGCGGCAGCGACCCCAGGGCGCTGGAGCAGTTCTGCCGGGACACCGTCATG
ACCATCTGGCACTACCACGGCGGCTGCCAGGTCGGCAGGGTCGTCGACCGCGACTACCGTGTGCTCGGCATCGAGGCGCT
GCGCGTCATCGATGGTTCCACGTTCAACGCCTCGCCGGGGACTAACCCGCAGGCCACCGTCATGATGCTTGGCAGATTGA
AGCCTCCAATCACTCTGAAATCAGTTACTCTTTGCATGGACCTTCAGGGTTCTCTTTCCAGCAGAGCTCTGGCTGAATAC
CTTTCTCTTTGGGATGAACTTCAATCAGTGGCTGTCCAGGAGGGTCGGATTTGGAAAGAACAGAATGCTCGAGCCTTCGA
TCAAAAGGAGAAAGCTGTGGAGTCGCTCGTTGCAGACATTAAAGAAGATGTGATGGTCTGGAGAGCTGCCGGGAAAGAAA
CTGGGGATGCAAGTGTCGGGTTTATCTTCAAGGACTGGAGGGGCTTGGTGCTACTTGCCGACCACAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12509.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis