Browse Element(s) Details


OsAffx.12508.1.S1_at

Description tigr:9630.m04414
TID=OsAffx.12508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 2253-8
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4552011/11SPX domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class
LOC_Os02g45520Os.18559.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45520OsAffx.12508.1.S1_at11/112+27690648..27696315SPX domain-containing protein, putative, expressed
LOC_Os02g45530OsAffx.12509.2.S1_at11/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45530OsAffx.12509.1.S1_at2/112+27697051..27702252HOTHEAD protein precursor, putative, expressed
LOC_Os02g45540Os.6053.1.S1_at11/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45540Os.51333.1.S1_at10/112+27703347..27707255rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os02g45550Os.35344.18.S1_x_at11/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550Os.35344.3.S1_x_at9/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45550OsAffx.22940.5.S1_x_at3/112+27708945..27714992transposon protein, putative, Mutator sub-class
LOC_Os02g45560OsAffx.2968.1.S1_at11/112+27717144..27717632hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12508.1.S1_at--51--1231Chr02:27695194..27695218 (25 bp)
AGTTCAGCTATTGATCTACTTTATG
LOC_Os02g45520
OsAffx.12508.1.S1_at--278--4831Chr02:27695218..27695242 (25 bp)
GCTCAAGTTTGCAATGGAAATTCTA
LOC_Os02g45520
OsAffx.12508.1.S1_at--103--2251Chr02:27695235..27695259 (25 bp)
AAATTCTACTGTCCGAGTCGAGCGT
LOC_Os02g45520
OsAffx.12508.1.S1_at--424--1151Chr02:27695250..27695274 (25 bp)
AGTCGAGCGTGGTCACTACGTTCTA
LOC_Os02g45520
OsAffx.12508.1.S1_at--891--1991Chr02:27695264..27695288 (25 bp)
ACTACGTTCTACTTCAACTGGTCTA
LOC_Os02g45520
OsAffx.12508.1.S1_at--1042--9831Chr02:27695287..27695311 (25 bp)
TACAAGCACCGTGGCCATGTTTCTA
LOC_Os02g45520
OsAffx.12508.1.S1_at--416--3991Chr02:27695296..27695320 (25 bp)
CGTGGCCATGTTTCTAGCAGTTCTT
LOC_Os02g45520
OsAffx.12508.1.S1_at--413--5031Chr02:27695312..27695336 (25 bp)
GCAGTTCTTGGGTTGACAGTTCTTC
LOC_Os02g45520
OsAffx.12508.1.S1_at--13--7671Chr02:27695321..27695345 (25 bp)
GGGTTGACAGTTCTTCCTGTAAATG
LOC_Os02g45520
OsAffx.12508.1.S1_at--116--9611Chr02:27695587..27695611 (25 bp)
TCATCACGTTCGTCTTCGCTGAGGT
LOC_Os02g45520
OsAffx.12508.1.S1_at--811--6711Chr02:27695594..27695618 (25 bp)
GTTCGTCTTCGCTGAGGTGCTCGAA
LOC_Os02g45520
Target Sequence 
AGTTCAGCTATTGATCTACTTTATGCTCAAGTTTGCAATGGAAATTCTACTGTCCGAGTCGAGCGTGGTCACTACGTTCT
ACTTCAACTGGTCTACAAGCACCGTGGCCATGTTTCTAGCAGTTCTTGGGTTGACAGTTCTTCCTGTAAATGTCATCGTT
GGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATCATGGTCCTGATCGGCATAGCCAT
GAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAATACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGC
TCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis