Browse Element(s) Details


Os.35302.1.S1_at

Description gb:AK068106.1
DB_XREF= gi:32978124
TID=Os.35302.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132B11, full insert sequence.
FL= gb:AK068106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4546011/11Uncharacterized conserved protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45429NANA2+27638381..27638680NA
LOC_Os02g45440OsAffx.24737.1.S1_at10/112+27640872..27642466hypothetical protein
LOC_Os02g45450Os.51078.1.S1_at11/112+27647066..27648337AP2 domain containing protein, expressed
LOC_Os02g45460Os.35302.1.S1_at11/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_s_at5/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_x_at1/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45470NANA2+27655556..27655789hypothetical protein
LOC_Os02g45480Os.23123.1.S1_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45480Os.23123.1.S2_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45490Os.49132.1.S1_at9/112+27662040..27665552expressed protein
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35302.1.S1_at--669--9371Chr02:27653442..27653466 (25 bp)
TCGAGGTTCTGCTTCTCGGTTGGAA
LOC_Os02g45460
Os.35302.1.S1_at--913--6611Chr02:27653424..27653448 (25 bp)
GTTGGAAGCATCTACCGAGCACCGC
LOC_Os02g45460
Os.35302.1.S1_at--132--8811Chr02:27653396..27653420 (25 bp)
TGTTCGTCGACACAACGCTGACCTC
LOC_Os02g45460
Os.35302.1.S1_at--438--3851Chr02:27653379..27653403 (25 bp)
CTGACCTCCGAGGAGTCCAGTGGAG
LOC_Os02g45460
Os.35302.1.S1_at--49--5831Chr02:27653283..27653307 (25 bp)
GACCCCATTGATGACGTCTTCATGA
LOC_Os02g45460
Os.35302.1.S1_at--1059--671Chr02:27653273..27653297 (25 bp)
ATGACGTCTTCATGAACACCTTCCT
LOC_Os02g45460
Os.35302.1.S1_at--233--6111Chr02:27653235..27653259 (25 bp)
GAGTGCATCGCTTACTTGAACGCCA
LOC_Os02g45460
Os.35302.1.S1_at--332--471Chr02:27653208..27653232 (25 bp)
ATCTCCATCACTGAACCAAGCTGAT
LOC_Os02g45460
Os.35302.1.S1_at--255--3251Chr02:27653192..27653216 (25 bp)
CAAGCTGATCTTGCCTGTTTCAGTT
LOC_Os02g45460
Os.35302.1.S1_at--286--6671Chr02:27653129..27653153 (25 bp)
GTTGCAGGACGAAACTTGCACGGAA
LOC_Os02g45460
Os.35302.1.S1_at--345--8451Chr02:27653077..27653101 (25 bp)
GGCCAAGGGAATGCCTCTTATTCAT
LOC_Os02g45460
Target Sequence 
TCGAGGTTCTGCTTCTCGGTTGGAAGCATCTACCGAGCACCGCCGCTGTTCGTCGACACAACGCTGACCTCCGAGGAGTC
CAGTGGAGCCATAAGACGAGGAACTGGAGAAAGGATGGACGGCGAAGGGAGATGCAAGCTGGTAGGGGTGGCCGTCGTCG
ACCCCATTGATGACGTCTTCATGAACACCTTCCTCAGCCTGCCGACCGAGTGCATCGCTTACTTGAACGCCACCATCTCC
ATCACTGAACCAAGCTGATCTTGCCTGTTTCAGTTGGTTGTATAGATCTTAATGCGTGGTGAAACGCATGAATGTTGCAG
GACGAAACTTGCACGGAAAAGAACAGACTGTACTATTGTAGTATTGGCCAAGGGAATGCCTCTTATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis