Browse Element(s) Details


Os.51078.1.S1_at

Description gb:AK106041.1
DB_XREF= gi:32991250
TID=Os.51078.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E01, full insert sequence.
FL= gb:AK106041.1 gb:AK060550.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4545011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45429NANA2+27638381..27638680NA
LOC_Os02g45440OsAffx.24737.1.S1_at10/112+27640872..27642466hypothetical protein
LOC_Os02g45450Os.51078.1.S1_at11/112+27647066..27648337AP2 domain containing protein, expressed
LOC_Os02g45460Os.35302.1.S1_at11/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_s_at5/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_x_at1/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45470NANA2+27655556..27655789hypothetical protein
LOC_Os02g45480Os.23123.1.S1_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45480Os.23123.1.S2_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45490Os.49132.1.S1_at9/112+27662040..27665552expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009631biological_processcold acclimation
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016049biological_processcell growth
GO:0048510biological_processregulation of timing of transition from vegetative to reproductive phase
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51078.1.S1_at--389--1571Chr02:27647769..27647793 (25 bp)
AGCTATGGAGCTACTGATCCTGCGC
LOC_Os02g45450
Os.51078.1.S1_at--324--8851Chr02:27647783..27647807 (25 bp)
TGATCCTGCGCGTTTGAACTCAACT
LOC_Os02g45450
Os.51078.1.S1_at--834--5471Chr02:27647798..27647822 (25 bp)
GAACTCAACTTGGTTTGGCGCGAAG
LOC_Os02g45450
Os.51078.1.S1_at--940--2831Chr02:27647856..27647880 (25 bp)
AAGTACCTCAGGTGTACTCCACTCG
LOC_Os02g45450
Os.51078.1.S1_at--16--4311Chr02:27647897..27647921 (25 bp)
CCTTTCGTTTTTCTTGAGCTTATCT
LOC_Os02g45450
Os.51078.1.S1_at--707--8771Chr02:27647936..27647960 (25 bp)
TGTATTGCTGCTCTTCTGATGAAAT
LOC_Os02g45450
Os.51078.1.S1_at--112--891Chr02:27647979..27648003 (25 bp)
AGGCCAGATCGAGCTTATGGGTTCT
LOC_Os02g45450
Os.51078.1.S1_at--692--3071Chr02:27648071..27648095 (25 bp)
AATCAGATCAGCCTTGTTACGAATG
LOC_Os02g45450
Os.51078.1.S1_at--1141--6111Chr02:27648097..27648121 (25 bp)
GAGTGATCGACCTTGTTCAGTGTTT
LOC_Os02g45450
Os.51078.1.S1_at--220--4931Chr02:27648164..27648188 (25 bp)
GCTTGCTTGATCTGACTCTTGGGAA
LOC_Os02g45450
Os.51078.1.S1_at--1130--2991Chr02:27648312..27648336 (25 bp)
AATGATGAGCCTATGATACTTCGAT
LOC_Os02g45450
Target Sequence 
AGCTATGGAGCTACTGATCCTGCGCGTTTGAACTCAACTTGGTTTGGCGCGAAGAGATCGCATGTACAGCTTAAGGGAGT
CGAGTACAAGTACCTCAGGTGTACTCCACTCGTTGCCCCTTTCCCTTCCCTTTCGTTTTTCTTGAGCTTATCTGCAGGGT
AATGTTATGTATTGCTGCTCTTCTGATGAAATGTGATCGGAAGAAGCGGAAGGCCAGATCGAGCTTATGGGTTCTGAAGA
CGGTGAAGGCTTGTCGAGTGTTGTGAGCATATATTCAGAAAGTCAGGCACTGTGAAAGTATGAATCAGATCAGCCTTGTT
ACGAATGAGAGTGATCGACCTTGTTCAGTGTTTATAATTGAACCACTTGTGTGTAATAAGCAGCAAAGCCATGTTGCTTG
CTTGATCTGACTCTTGGGAATGGTATATTTCTCAAAGAATGCAGGATTGACTACTCAGAATTTGACATTTTGCAGTGAAA
TGATAGGATTGTTAAATTAACATTGGAGGAGAGGCATGTGTATATATGTTAAGAAACATTAGTAATGATGAGCCTATGAT
ACTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis