Browse Element(s) Details


Os.49710.1.S1_at

Description gb:AK062468.1
DB_XREF= gi:32972486
TID=Os.49710.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E04, full insert sequence.
FL= gb:AK062468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4060010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40560OsAffx.19276.1.S1_s_at10/1111+23702300..23703058hypothetical protein
LOC_Os11g40564NANA11+23707094..23708191hypothetical protein
LOC_Os11g40570Os.24003.2.S1_x_at11/1111+23709332..23713269Plant viral-response family protein, expressed
LOC_Os11g40590Os.37812.1.S1_s_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40590OsAffx.31408.1.S1_x_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40600Os.49710.1.S1_at10/1111+23725097..23726489expressed protein
LOC_Os11g40610Os.26978.1.S1_a_at11/1111+23729086..23732131early flowering 4, putative, expressed
LOC_Os11g40620NANA11+23746080..23746340hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_s_at11/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_at8/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.3.S1_at7/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.1.S1_at6/1111+23749067..23751121hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009644biological_processresponse to high light intensity
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49710.1.S1_at--1079--10011Chr11:23726300..23726324 (25 bp)
TAGCAGCATTCCATGGCGATCTCCT
LOC_Os11g40600
Os.49710.1.S1_at--63--4611NONE
GCGACATGCAGCAGTGCTACGCGTC
NONE
Os.49710.1.S1_at--1099--7311Chr11:23725597..23725621 (25 bp)
GTGCTACGCGTCACCTCGAGCAAGA
LOC_Os11g40600
Os.49710.1.S1_at--743--5991Chr11:23725571..23725595 (25 bp)
GAGACCACTCTTCTCAAGGGCGGCG
LOC_Os11g40600
Os.49710.1.S1_at--8--4491Chr11:23725225..23725249 (25 bp)
GCCGGCTCCCGCAACTGAAGAAACA
LOC_Os11g40600
Os.49710.1.S1_at--436--5531Chr11:23725206..23725230 (25 bp)
GAAACAAACCGAACTGAATCGCTGA
LOC_Os11g40600
Os.49710.1.S1_at--803--5251Chr11:23725191..23725215 (25 bp)
GAATCGCTGAAACATCCAAGAACTT
LOC_Os11g40600
Os.49710.1.S1_at--742--5671Chr11:23725166..23725190 (25 bp)
GACATCTCAACATGTTCTTCTCAAC
LOC_Os11g40600
Os.49710.1.S1_at--603--2111Chr11:23725157..23725181 (25 bp)
ACATGTTCTTCTCAACTGATGATGA
LOC_Os11g40600
Os.49710.1.S1_at--654--2811Chr11:23725127..23725151 (25 bp)
AAGATTATTATCTCTGGGATCGGAC
LOC_Os11g40600
Os.49710.1.S1_at--1--7671Chr11:23725112..23725136 (25 bp)
GGGATCGGACTAGTTCTTGCAAATA
LOC_Os11g40600
Target Sequence 
TAGCAGCATTCCATGGCGATCTCCTCCGTCTTCCNGCGTCCATCGCTGTTCTCTTCCCCGCCGGCGGCGGCGGCGGCTTC
CTCTCCCCGGCGACATGCAGCAGTGCTACGCGTCACCTCGAGCAAGANGAGACCACTCTTCTCAAGGGCGGCGACGTCGC
TGACGGTNAGATGCGAGCAGACNGCGAANCCNGGCGGCGGCACCGGCGCCGGCGCCGCCNACGTGTGGCTGANCCNCCTC
GCCATGGTCAGNTTCTCCNCCGCCGTCGTCGTCNANGTCTCCACCGGCGAANGGCCTCNTCGCGAACTTGGGCGTGGCGA
CGCCGGCGCCGACGCTGGCGCTGGTGGTGACGTCACTCGCCGCCGGCCTCGCCGTCTACTTCATCTTCCAGGCCGGCTCC
CGCAACTGAAGAAACAAACCGAACTGAATCGCTGAAACATCCAAGAACTTGACATCTCAACATGTTCTTCTCAACTGATG
ATGAGAATTAAGATTATTATCTCTGGGATCGGACTAGTTCTTGCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis