Browse Element(s) Details


OsAffx.19276.1.S1_s_at

Description tigr:9639.m03714
TID=OsAffx.19276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4056010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed
LOC_Os11g40560OsAffx.19276.1.S1_s_at10/1111+23702300..23703058hypothetical protein
LOC_Os11g40564NANA11+23707094..23708191hypothetical protein
LOC_Os11g40570Os.24003.2.S1_x_at11/1111+23709332..23713269Plant viral-response family protein, expressed
LOC_Os11g40590Os.37812.1.S1_s_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40590OsAffx.31408.1.S1_x_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40600Os.49710.1.S1_at10/1111+23725097..23726489expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19276.1.S1_s_at--900--9531Chr11:23702554..23702578 (25 bp)
TCTACTACCGGAGGGCACGATGCTG
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--672--6171Chr11:23702687..23702711 (25 bp)
GAGGAGTTAATTGCCGCCGAGCTCG
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--598--9371Chr11:23702727..23702751 (25 bp)
TCGACGCGTCGCAGGACAAGTTCGT
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--25--9211Chr11:23702756..23702780 (25 bp)
TGCCAGGCCATGATCGCGGAGAAGC
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--373--9951Chr11:23702798..23702822 (25 bp)
TACGCGGTCGTCGAGGAAACCGGCT
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--630--2371Chr11:23702814..23702838 (25 bp)
AAACCGGCTAGGTGATGGCCACCAT
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--204--3591Chr11:23702836..23702860 (25 bp)
CATTTGCAGGGCGTTCTTCGGCAGA
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--12--1871Chr11:23702883..23702907 (25 bp)
ACGACGATGATCTCTTTTGTGGCTG
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--1115--9551Chr11:23702895..23702919 (25 bp)
TCTTTTGTGGCTGCGTTGATGCGAA
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--194--6611Chr11:23702942..23702966 (25 bp)
GATTGGGCGGACGAATTCATTGATG
LOC_Os11g40560
OsAffx.19276.1.S1_s_at--907--10671Chr11:23703068..23703092 (25 bp)
TTCCTTCTTTGTTTCGGTTCTATGA
NONE
Target Sequence 
TCTACTACCGGAGGGCACGATGCTGCTGACGAAGACGTTGGTCGACAAGATCCTGGCGCTGCGGCGGAGGAGGTTCCCCA
TGCCGCCAGCCACGGGCGGCGAGCGATTGTGGTGGGTGTCGCCGGAGTTCCGCGAGGAGTTAATTGCCGCCGAGCTCGCG
GCGGCGGCGGTGTTCGACGCGTCGCAGGACAAGTTCGTGGAGTGCCAGGCCATGATCGCGGAGAAGCGCCACCCGGAGCA
CGGGTACGCGGTCGTCGAGGAAACCGGCTAGGTGATGGCCACCATTTGCAGGGCGTTCTTCGGCAGATACAACGAGAGCG
ACGACGATGACGACGATGATCTCTTTTGTGGCTGCGTTGATGCGAACGAATGTAAATGCGGTGGTGATGATTGGGCGGAC
GAATTCATTGATGAGGAAGATGATGATTGCAGTGAGGATGTGGATGAGAAGGAGGAGGAGAAGGATGAAAGTTGCTGTCA
AAGGATGATATATCGTTTGAGATGATAAAATATTTTCCTTCTTTGTTTCGGTTCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19276.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis