Browse Element(s) Details


Os.9671.1.S1_at

Description gb:AK107901.1
DB_XREF= gi:32993110
TID=Os.9671.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F08, full insert sequence.
FL= gb:AK107901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4053011/11nonspecific lipid-transfer protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40480Os.55081.1.S1_at11/1111+23659253..23660610expressed protein
LOC_Os11g40490OsAffx.31407.1.S1_at11/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490Os.29072.1.S1_at4/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490OsAffx.31407.2.S1_x_at1/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40500Os.13577.1.S1_at10/1111+23665106..23668297signal peptidase I family protein, expressed
LOC_Os11g40510Os.8943.1.S1_at11/1111+23669386..23674277RNA recognition motif family protein, expressed
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed
LOC_Os11g40560OsAffx.19276.1.S1_s_at10/1111+23702300..23703058hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9671.1.S1_at--154--9671Chr11:23679629..23679653 (25 bp)
TCACCATCAACGTCGCCGGTGTACG
LOC_Os11g40530
Os.9671.1.S1_at--1101--3831Chr11:23679671..23679695 (25 bp)
CTGCTTGTGTACTTGATGGTGGCCA
LOC_Os11g40530
Os.9671.1.S1_at--757--7291Chr11:23679794..23679818 (25 bp)
GTGCCGCCGGCATGCTGTGCACAGC
LOC_Os11g40530
Os.9671.1.S1_at--837--5091Chr11:23679851..23679875 (25 bp)
GCACGGAGCCCCAATTATGGTAGCT
LOC_Os11g40530
Os.9671.1.S1_at--53--831Chr11:23679867..23679891 (25 bp)
ATGGTAGCTACATTAGGAGCCCCAA
LOC_Os11g40530
Os.9671.1.S1_at--364--111Chr11:23679878..23679902 (25 bp)
ATTAGGAGCCCCAACGCTAGGCGTC
LOC_Os11g40530
Os.9671.1.S1_at--192--2611Chr11:23679890..23679914 (25 bp)
AACGCTAGGCGTCTCTTCGCCGTCT
LOC_Os11g40530
Os.9671.1.S1_at--1024--591Chr11:23679926..23679950 (25 bp)
ATGCCGCAGTGCTCTTAGATCTTAA
LOC_Os11g40530
Os.9671.1.S1_at--239--3671Chr11:23679939..23679963 (25 bp)
CTTAGATCTTAATTAGCTTGCTTCG
LOC_Os11g40530
Os.9671.1.S1_at--905--9731Chr11:23679948..23679972 (25 bp)
TAATTAGCTTGCTTCGATCACACCC
LOC_Os11g40530
Os.9671.1.S1_at--656--4911Chr11:23679958..23679982 (25 bp)
GCTTCGATCACACCCATGGCTATGG
LOC_Os11g40530
Target Sequence 
TCACCATCAACGTCGCCGGTGTACGCCGTTGCCGCCGCGCTGCTGCTTGTGTACTTGATGGTGGCCATGGGCGCCGGCGT
GGTGGAGGCGGCGGTGGTGCCACCGTCGAGGTGCAACCCGACGCTGCTGACGCCGTGCGCGGGGCCGGCGCTGTTTGGGG
GGCCGGTGCCGCCGGCATGCTGTGCACAGCTGCGGGCACAGGCGGCGTGCCTATGCGCGTACGCACGGAGCCCCAATTAT
GGTAGCTACATTAGGAGCCCCAACGCTAGGCGTCTCTTCGCCGTCTGCGGCCTTCCCATGCCGCAGTGCTCTTAGATCTT
AATTAGCTTGCTTCGATCACACCCATGGCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis