Browse Element(s) Details


Os.5625.1.S1_at

Description gb:AK120965.1
DB_XREF= gi:37990588
TID=Os.5625.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040E06, full insert sequence.
FL= gb:AK120965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4055011/11Receptor kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40500Os.13577.1.S1_at10/1111+23665106..23668297signal peptidase I family protein, expressed
LOC_Os11g40510Os.8943.1.S1_at11/1111+23669386..23674277RNA recognition motif family protein, expressed
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed
LOC_Os11g40560OsAffx.19276.1.S1_s_at10/1111+23702300..23703058hypothetical protein
LOC_Os11g40564NANA11+23707094..23708191hypothetical protein
LOC_Os11g40570Os.24003.2.S1_x_at11/1111+23709332..23713269Plant viral-response family protein, expressed
LOC_Os11g40590Os.37812.1.S1_s_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40590OsAffx.31408.1.S1_x_at11/1111+23716755..23723090pg1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5625.1.S1_at--954--5811Chr11:23693543..23693567 (25 bp)
GACCGCGCGGACGAACGGACGAACA
LOC_Os11g40550
Os.5625.1.S1_at--377--5791Chr11:23693552..23693576 (25 bp)
GACGAACGGACGAACACGGTGCAAT
LOC_Os11g40550
Os.5625.1.S1_at--414--1331Chr11:23693582..23693606 (25 bp)
AGAGGAGCGATGATCCGTGACGCAC
LOC_Os11g40550
Os.5625.1.S1_at--337--4531Chr11:23693611..23693635 (25 bp)
GCCGCCGATGCATGTGGAGCTCAAA
LOC_Os11g40550
Os.5625.1.S1_at--488--3511Chr11:23693621..23693645 (25 bp)
CATGTGGAGCTCAAACGTGGACGAA
LOC_Os11g40550
Os.5625.1.S1_at--826--1891Chr11:23693635..23693659 (25 bp)
ACGTGGACGAATCCCGGCCGTTGAT
LOC_Os11g40550
Os.5625.1.S1_at--194--8951Chr11:23693672..23693696 (25 bp)
TGACGTGGACGAATCCTGGTCGTTG
LOC_Os11g40550
Os.5625.1.S1_at--70--571Chr11:23693684..23693708 (25 bp)
ATCCTGGTCGTTGCATGCGTGTGAA
LOC_Os11g40550
Os.5625.1.S1_at--161--7571Chr11:23693739..23693763 (25 bp)
GGGCTGCGTGTAAATTCAAGGGTCT
LOC_Os11g40550
Os.5625.1.S1_at--65--2111Chr11:23693843..23693867 (25 bp)
ACATGTAATTCCATAACGTCATAGG
LOC_Os11g40550
Os.5625.1.S1_at--1005--1451Chr11:23693875..23693899 (25 bp)
GAGTAAAGGTTTCTTCTAGCCGGAG
LOC_Os11g40550
Target Sequence 
GACCGCGCGGACGAACGGACGAACACGGTGCAATGGTGGAGAGGAGCGATGATCCGTGACGCACGGTCGCCGCCGATGCA
TGTGGAGCTCAAACGTGGACGAATCCCGGCCGTTGATGCTGAGGAGGGATGACGTGGACGAATCCTGGTCGTTGCATGCG
TGTGAAGGGTGGGTGGAAGTGATGGGGAATGTGGTTGGGCTGCGTGTAAATTCAAGGGTCTGAATTTGTAAAAATGAATA
TGTGACAGAGAGAGATAAAAGAAAATGGAGAAAAAAAACAAAGGAAAGACCTGAGGACAAACATGTAATTCCATAACGTC
ATAGGAACTTTTGAGTAAAGGTTTCTTCTAGCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis