Browse Element(s) Details


Os.50236.1.S1_at

Description gb:AK120270.1
DB_XREF= gi:37989893
TID=Os.50236.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047K03, full insert sequence.
FL= gb:AK120270.1 gb:AK068224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4054011/11Sugar transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40480Os.55081.1.S1_at11/1111+23659253..23660610expressed protein
LOC_Os11g40490OsAffx.31407.1.S1_at11/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490Os.29072.1.S1_at4/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490OsAffx.31407.2.S1_x_at1/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40500Os.13577.1.S1_at10/1111+23665106..23668297signal peptidase I family protein, expressed
LOC_Os11g40510Os.8943.1.S1_at11/1111+23669386..23674277RNA recognition motif family protein, expressed
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed
LOC_Os11g40560OsAffx.19276.1.S1_s_at10/1111+23702300..23703058hypothetical protein
LOC_Os11g40564NANA11+23707094..23708191hypothetical protein
LOC_Os11g40570Os.24003.2.S1_x_at11/1111+23709332..23713269Plant viral-response family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005337molecular_functionnucleoside transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50236.1.S1_at--1143--2811Chr11:23689411..23689435 (25 bp)
AAGTTTTTGCTCACTTGCCTTCTGG
LOC_Os11g40540
Os.50236.1.S1_at--404--5711Chr11:23689443..23689467 (25 bp)
GACTACTTTCAATTTACTGCTTCCC
LOC_Os11g40540
Os.50236.1.S1_at--29--1991Chr11:23689458..23689482 (25 bp)
ACTGCTTCCCGGTGATGCTAAGTAC
LOC_Os11g40540
Os.50236.1.S1_at--707--10331Chr11:23689509..23689533 (25 bp)
TTTATGCATTCGTGTGCTGCTTGGT
LOC_Os11g40540
Os.50236.1.S1_at--935--7891Chr11:23689531..23689555 (25 bp)
GGTTCTCGTGTTCGTCTACTTAAGA
LOC_Os11g40540
Os.50236.1.S1_at--689--7131Chr11:23689572..23689596 (25 bp)
GTCTTCCCTTGGAGCTCATAGCTGA
LOC_Os11g40540
Os.50236.1.S1_at--637--6871Chr11:23689652..23689676 (25 bp)
GTATTCAAGGTGACCCAGGCTGAGT
LOC_Os11g40540
Os.50236.1.S1_at--150--731Chr11:23689682..23689706 (25 bp)
ATGATTGCTTGCTAGTCCGTGTACA
LOC_Os11g40540
Os.50236.1.S1_at--519--10552Chr11:23690114..23690138 (25 bp)
TTCATTGTCTTTCTGTGCTTTGGAG
NONE
Os.50236.1.S1_at--839--811Chr11:23689925..23689949 (25 bp)
ATGGTGATTCAGCACTCCTGGTGAA
LOC_Os11g40540
Os.50236.1.S1_at--63--10611Chr11:23689960..23689984 (25 bp)
TTCTGATGCTATTTCCAGGCTCAAG
LOC_Os11g40540
Target Sequence 
AAGTTTTTGCTCACTTGCCTTCTGGTTTGGCAGACTACTTTCAATTTACTGCTTCCCGGTGATGCTAAGTACCATTGGGC
TCAGTGGGGCATGTGCGATTTATGCATTCGTGTGCTGCTTGGTTCTCGTGTTCGTCTACTTAAGAGTTCCAGAGACGAAG
GGTCTTCCCTTGGAGCTCATAGCTGAGATTTTCAAGTTTTCAAGACAAGAATGTCTATAGCAGATATGTGCACTATGTTC
AGTATTCAAGGTGACCCAGGCTGAGTGTTGAATGATTGCTTGCTAGTCCGTGTACATAGACAAATGTAGGTTTGAATGTT
GCAAATTTTGTCCTAGTTAGGNGATTGGCCATAGTGTTTGTACTTTGTAGTTGTTCATTGTCTTTCTGTGCTTTGGAGAT
ACATAAAAAAGGAAAATCATACATGGCTTCTTTTGCAGNACAAAAAAAGTAATGATGCTGTATACAGACAAAGATTACCT
GTAGTTAAGTAGGAGTAATACTCTTCAATGTAACATGGTGATTCAGCACTCCTGGTGAAGTTGTGACATTTCTGATGCTA
TTTCCAGGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis