Browse Element(s) Details


Os.13577.1.S1_at

Description gb:AK106677.1
DB_XREF= gi:32991886
TID=Os.13577.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A11, full insert sequence.
FL= gb:AK106677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4050010/11signal peptidase I family protein, expressed
LOC_Os07g278501/11C2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40470OsAffx.22848.4.S1_at2/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.4.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.3.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40480Os.55081.1.S1_at11/1111+23659253..23660610expressed protein
LOC_Os11g40490OsAffx.31407.1.S1_at11/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490Os.29072.1.S1_at4/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490OsAffx.31407.2.S1_x_at1/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40500Os.13577.1.S1_at10/1111+23665106..23668297signal peptidase I family protein, expressed
LOC_Os11g40510Os.8943.1.S1_at11/1111+23669386..23674277RNA recognition motif family protein, expressed
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0003700molecular_functiontranscription factor activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13577.1.S1_at--876--8071Chr11:23666868..23666892 (25 bp)
GGACCTGTCCCTTATGGTCTAATTA
LOC_Os11g40500
Os.13577.1.S1_at--955--10251NONE
TTTGTCGGGTTTGGCCACTGAAGGA
NONE
Os.13577.1.S1_at--672--7251Chr11:23665591..23665615 (25 bp)
GTCCGATAGATCCAATGTCAGCTGA
LOC_Os11g40500
Os.13577.1.S1_at--771--7831Chr11:23665561..23665585 (25 bp)
GGTAACTCAGCCTTATTTTTCTTCT
LOC_Os11g40500
Os.13577.1.S1_at--768--10411Chr11:23665532..23665556 (25 bp)
TTATTTTCAGAATCCAGGCCTCTCG
LOC_Os11g40500
Os.13577.1.S1_at--352--8731Chr11:23665475..23665499 (25 bp)
TTACCCGTTTGCTCCAGAATTTATC
LOC_Os11g40500
Os.13577.1.S1_at--1077--5731Chr11:23665447..23665471 (25 bp)
GACGGCATGCATATCTTGAGATTTT
LOC_Os11g40500
Os.13577.1.S1_at--125--2951Chr11:23665408..23665432 (25 bp)
AAGGCCCTACATTCTGGTTCATGGT
LOC_Os11g40500
Os.13577.1.S1_at--613--7171Chr11:23665383..23665407 (25 bp)
GTCTGCCATGGCACATTTTACAGCA
LOC_Os11g40500
Os.13577.1.S1_at--506--5211Chr11:23665315..23665339 (25 bp)
GAATTTTGGCCATAGTCCTCAAGGG
LOC_Os11g40500
Os.13577.1.S1_at--356--2832Chr07:16259178..16259448 (25 bp)
AAGTTCTCAACCATGCTCTTGTATA
LOC_Os07g27850
Target Sequence 
GGACCTGTCCCTTATGGTCTAATTACAGGGAAGATCTTTTGTCGGGTTTGGCCACTGAAGGATTTTGGTCCGATAGATCC
AATGTCAGCTGAGTAGGGGTAACTCAGCCTTATTTTTCTTCTTCACTTATTTTCAGAATCCAGGCCTCTCGCTCTACCTT
TATCTCTCCGAGCCGACCTTTTTTTACCCGTTTGCTCCAGAATTTATCGAAGACGGCATGCATATCTTGAGATTTTTATG
ATCAGGCAACAAGGCCCTACATTCTGGTTCATGGTGTCTGCCATGGCACATTTTACAGCAAAACCGAGAGCATCAAAGTT
TATTGCTCAGTTTTTTAACATGAGAATTTTGGCCATAGTCCTCAAGGGAATCCCAAGTTCTCAACCATGCTCTTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis