Browse Element(s) Details


Os.55081.1.S1_at

Description gb:AK107437.1
DB_XREF= gi:32992646
TID=Os.55081.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B01, full insert sequence.
FL= gb:AK107437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4048011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40460Os.27639.1.S1_x_at6/1111+23634286..23638246transposon protein, putative, unclassified
LOC_Os11g40460OsAffx.8980.1.S1_at5/1111+23634286..23638246transposon protein, putative, unclassified
LOC_Os11g40470OsAffx.22848.4.S1_at2/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.4.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.3.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40480Os.55081.1.S1_at11/1111+23659253..23660610expressed protein
LOC_Os11g40490OsAffx.31407.1.S1_at11/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490Os.29072.1.S1_at4/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490OsAffx.31407.2.S1_x_at1/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40500Os.13577.1.S1_at10/1111+23665106..23668297signal peptidase I family protein, expressed
LOC_Os11g40510Os.8943.1.S1_at11/1111+23669386..23674277RNA recognition motif family protein, expressed
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55081.1.S1_at--436--951Chr11:23660011..23660035 (25 bp)
AGGACACCGAGAGCCACGTCGTGGC
LOC_Os11g40480
Os.55081.1.S1_at--262--1031Chr11:23660163..23660187 (25 bp)
AGGTACGACATCGAGAGGCTAAAGC
LOC_Os11g40480
Os.55081.1.S1_at--796--8291Chr11:23660343..23660367 (25 bp)
GGCTTCGAGCATCTGGCTAAGCTGC
LOC_Os11g40480
Os.55081.1.S1_at--432--9511Chr11:23660371..23660395 (25 bp)
TCTCTCCTCAAAGAATTAGTTGCTA
LOC_Os11g40480
Os.55081.1.S1_at--682--151Chr11:23660385..23660409 (25 bp)
ATTAGTTGCTAATCTCGCTGTTTAA
LOC_Os11g40480
Os.55081.1.S1_at--1035--5531Chr11:23660420..23660444 (25 bp)
GAAACTTCATTTCTCCCTGATTATG
LOC_Os11g40480
Os.55081.1.S1_at--354--3871Chr11:23660436..23660460 (25 bp)
CTGATTATGATCAATGTGGCGTAGC
LOC_Os11g40480
Os.55081.1.S1_at--1155--7531Chr11:23660451..23660475 (25 bp)
GTGGCGTAGCTGTTATGATCGAAAT
LOC_Os11g40480
Os.55081.1.S1_at--505--951Chr11:23660527..23660551 (25 bp)
AGGAAAACCATCACTGACAGAATCG
LOC_Os11g40480
Os.55081.1.S1_at--621--3951Chr11:23660550..23660574 (25 bp)
CGGATTATGCCAAATAGTGCTCTAA
LOC_Os11g40480
Os.55081.1.S1_at--182--1131Chr11:23660565..23660589 (25 bp)
AGTGCTCTAATGTCTAATCATAATC
LOC_Os11g40480
Target Sequence 
AGGACACCGAGAGCCACGTCGTGGCCATCCGCGACATGGACGCGAGGGCGTTCAAGGCCATGCTCCACTTCATCTACACC
GACTCGCTGCCCAATGTCGACGACGGCGGCGAGGCGGCGGCCATGGCGCAGCATCTGCTCGCGGCGGCGGACAGGTACGA
CATCGAGAGGCTAAAGCTGATCTGCGAGGACAAGCTAAGCGGCGGCGTCGACGCGACCACGGCGGCGACGACGCTGGCGC
TGGCGGAGCAGCACGGCTGCTGCCGGCTGAAGGAGGCGTGCCTCAGGTTCATGGCGTCTCCGGCCAACCTCAAGGCGGCC
ATGGCGAGCGATGGCTTCGAGCATCTGGCTAAGCTGCCCTTCTCTCCTCAAAGAATTAGTTGCTAATCTCGCTGTTTAAT
TATGCAGTAGAAACTTCATTTCTCCCTGATTATGATCAATGTGGCGTAGCTGTTATGATCGAAATTTGATGGTTTTTTTC
CGATTTGATCATAATTTAAAAAGTTTGGATGTAATTAGGAAAACCATCACTGACAGAATCGGATTATGCCAAATAGTGCT
CTAATGTCTAATCATAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis