Browse Element(s) Details


OsAffx.31407.2.S1_x_at

Description tigr:9639.m03731
TID=OsAffx.31407.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4068011/11BTB/POZ domain containing protein, expressed
LOC_Os11g404901/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40640NANA11+23751629..23754250transposon protein, putative, Mutator sub-class
LOC_Os11g40650OsAffx.19277.1.S1_at11/1111+23758366..23759806hypothetical protein
LOC_Os11g40660OsAffx.31409.1.S1_s_at7/1111+23766621..23767283hypothetical protein
LOC_Os11g40670OsAffx.3280.1.S1_x_at1/1111+23767986..23769359retrotransposon protein, putative, unclassified
LOC_Os11g40674Os.57215.1.S1_at11/1111+23772292..23772931expressed protein
LOC_Os11g40680OsAffx.31407.2.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680OsAffx.31407.2.S1_x_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680Os.8232.1.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40690NANA11+23801194..23806511mannitol dehydrogenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31407.2.S1_x_at--464--5672Chr11:23778199..23778223 (25 bp)
GACATGCACCGGCATCTCGGGAGCC
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--1075--2091Chr11:23778198..23778222 (25 bp)
ACATGCACCGGCATCTCGGGAGCCT
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--712--8471Chr11:23778054..23778078 (25 bp)
TGGCGACGAGCCGTCACAACGACAG
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--334--4091Chr11:23778051..23778075 (25 bp)
CGACGAGCCGTCACAACGACAGGGA
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--467--1872Chr04:10763295..10763320 (24 bp)
ACGAGCCGTCACAACGACAGGGAGA
NONE
OsAffx.31407.2.S1_x_at--522--4071Chr11:23778048..23778072 (25 bp)
CGAGCCGTCACAACGACAGGGAGAC
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--658--2591Chr11:23778037..23778061 (25 bp)
AACGACAGGGAGACGATCCGTGTCC
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--442--2131Chr11:23778033..23778057 (25 bp)
ACAGGGAGACGATCCGTGTCCACGA
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--514--3471Chr11:23778032..23778056 (25 bp)
CAGGGAGACGATCCGTGTCCACGAC
LOC_Os11g40680
OsAffx.31407.2.S1_x_at--413--9212Chr11:23663236..23663260 (25 bp)
TCCACGACATGGAGCCGAGGGTGTT
LOC_Os11g40490
OsAffx.31407.2.S1_x_at--1119--5691Chr11:23777962..23777986 (25 bp)
GACTCGTTGCCCAAGGTAGACGACG
LOC_Os11g40680
Target Sequence 
GACATGCACCGGCATCTCGGGAGCCTCCTCTCCGGCGGGCATGGGGCGGACGTCACGCTCCAGGTCGGCGACGAGACGTT
CGCGGCGCACCGGTGCGTGCTCGCCGCCCGGTCGCCGGTGTTCATGGCGGAGCTCTTCGGCCCGATGGCGACGAGCCGTC
ACAACGACAGGGAGACGATCCGTGTCCACGACATGGAGCCGAGGGTGTTCGAGGCCATGCTCCACTTCATCTACAACGAC
TCGTTGCCCAAGGTAGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31407.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis