Browse Element(s) Details


OsAffx.19277.1.S1_at

Description tigr:9639.m03723
TID=OsAffx.19277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4065011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40620NANA11+23746080..23746340hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_s_at11/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_at8/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.3.S1_at7/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.1.S1_at6/1111+23749067..23751121hypothetical protein
LOC_Os11g40640NANA11+23751629..23754250transposon protein, putative, Mutator sub-class
LOC_Os11g40650OsAffx.19277.1.S1_at11/1111+23758366..23759806hypothetical protein
LOC_Os11g40660OsAffx.31409.1.S1_s_at7/1111+23766621..23767283hypothetical protein
LOC_Os11g40670OsAffx.3280.1.S1_x_at1/1111+23767986..23769359retrotransposon protein, putative, unclassified
LOC_Os11g40674Os.57215.1.S1_at11/1111+23772292..23772931expressed protein
LOC_Os11g40680OsAffx.31407.2.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680OsAffx.31407.2.S1_x_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680Os.8232.1.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19277.1.S1_at--300--10012Chr04:11702247..11702271 (25 bp)
TAGCATTGGCATAACACCCTCTATT
NONE
OsAffx.19277.1.S1_at--161--9551Chr11:23759656..23759680 (25 bp)
TCTAGCTTCTTTCGCCATCTTGTCA
LOC_Os11g40650
OsAffx.19277.1.S1_at--650--432Chr04:11702348..11702372 (25 bp)
ATCTTGTCAGCCATCCTGTTGATCT
NONE
OsAffx.19277.1.S1_at--973--8792Chr04:11702364..11702388 (25 bp)
TGTTGATCTCCCTGGGTATCCAAGT
NONE
OsAffx.19277.1.S1_at--25--7691Chr11:23759611..23759635 (25 bp)
GGGTATCCAAGTGACCTGCATCCAA
LOC_Os11g40650
OsAffx.19277.1.S1_at--1092--7371Chr11:23759601..23759625 (25 bp)
GTGACCTGCATCCAACTTTCAGGAA
LOC_Os11g40650
OsAffx.19277.1.S1_at--482--5211Chr11:23759567..23759591 (25 bp)
GAATTTGACTCCAAAAGGGCCTGAG
LOC_Os11g40650
OsAffx.19277.1.S1_at--483--1091Chr11:23759552..23759576 (25 bp)
AGGGCCTGAGACTCCAATGACCTGG
LOC_Os11g40650
OsAffx.19277.1.S1_at--171--3911Chr11:23759531..23759555 (25 bp)
CTGGATCTGCACCAAAGTCTTTTTT
LOC_Os11g40650
OsAffx.19277.1.S1_at--626--991Chr11:23759516..23759540 (25 bp)
AGTCTTTTTTCCTGAACACTTCTGC
LOC_Os11g40650
OsAffx.19277.1.S1_at--773--5151Chr11:23758410..23758434 (25 bp)
GCAACTCTCCTTCGCGAGTGGATAA
LOC_Os11g40650
Target Sequence 
TAGCATTGGCATAACACCCTCTATTTGGGTAAGCAAGGTGAGAGACATTTTGACAATTATAGATAGGATCATTAAGCAAC
ATAGCTCTAGCTTCTTTCGCCATCTTGTCAGCCATCCTGTTGATCTCCCTGGGTATCCAAGTGACCTGCATCCAACTTTC
AGGAATGGTGGAAAGAATTTGACTCCAAAAGGGCCTGAGACTCCAATGACCTGGATCTGCACCAAAGTCTTTTTTCCTGA
ACACTTCTGCAATTATCAGGTTATCTGTGAGGAAGGGAGGAGGGGTTGGGAACCGCTGCTCATGAGGGAGAGGGCGGCGC
ACTGCCACTCACCGGTGGGGAGGGTGCCACCGCCACTTGCTCTTGGGGAGAAGCTAGGCGCCGCCGCAACTCTCCTTCGC
GAGTGGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis