Browse Element(s) Details


Os.8232.1.S1_at

Description gb:AU094687
DB_XREF= gi:8857369
DB_XREF=AU094687
CLONE=E20493
TID=Os.8232.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8232 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566275.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4068011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40640NANA11+23751629..23754250transposon protein, putative, Mutator sub-class
LOC_Os11g40650OsAffx.19277.1.S1_at11/1111+23758366..23759806hypothetical protein
LOC_Os11g40660OsAffx.31409.1.S1_s_at7/1111+23766621..23767283hypothetical protein
LOC_Os11g40670OsAffx.3280.1.S1_x_at1/1111+23767986..23769359retrotransposon protein, putative, unclassified
LOC_Os11g40674Os.57215.1.S1_at11/1111+23772292..23772931expressed protein
LOC_Os11g40680OsAffx.31407.2.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680OsAffx.31407.2.S1_x_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680Os.8232.1.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40690NANA11+23801194..23806511mannitol dehydrogenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8232.1.S1_at--691--6611Chr11:23777669..23777693 (25 bp)
GTTGGCTACTTGAATTGGGAGCTGT
LOC_Os11g40680
Os.8232.1.S1_at--1024--6731Chr11:23777633..23777657 (25 bp)
GTTCAGTGGCATACCTTTTTTATAA
LOC_Os11g40680
Os.8232.1.S1_at--1070--311Chr11:23777593..23777617 (25 bp)
ATACTTTATTGTAATTACGTCCTGA
LOC_Os11g40680
Os.8232.1.S1_at--519--10471Chr11:23777579..23777603 (25 bp)
TTACGTCCTGATTACTGTATACATT
LOC_Os11g40680
Os.8232.1.S1_at--70--10411Chr11:23777556..23777580 (25 bp)
TTTTGTGTACAAGCTTCATTATGAT
LOC_Os11g40680
Os.8232.1.S1_at--244--4911Chr11:23777544..23777568 (25 bp)
GCTTCATTATGATACGAGTCTCCAT
LOC_Os11g40680
Os.8232.1.S1_at--274--1431Chr11:23777494..23777518 (25 bp)
AGAAAAGTCTTCAGAGTCCCTCCGT
LOC_Os11g40680
Os.8232.1.S1_at--17--6092Chr12:21126934..21126953 (20 bp)
GAGTCCCTCCGTTCCATGTTATAAG
NONE
Os.8232.1.S1_at--204--7691Chr11:23777364..23777388 (25 bp)
GGGTTATGATCTGCGCCTGCTAGAG
LOC_Os11g40680
Os.8232.1.S1_at--311--6031Chr11:23777342..23777366 (25 bp)
GAGATGCTTTTGTGTGTACTATCCA
LOC_Os11g40680
Os.8232.1.S1_at--855--7471Chr11:23777331..23777355 (25 bp)
GTGTGTACTATCCATACCATACATG
LOC_Os11g40680
Target Sequence 
GTTGGCTACTTGAATTGGGAGCTGTTAATTAATGAGGTTCAGTGGCATACCTTTTTTATAATTAATAAAGTTGATCATAC
TTTATTGTAATTACGTCCTGATTACTGTATACATTTTGTGTACAAGCTTCATTATGATACGAGTCTCCATATATGGATAA
TGCATCTTTGAAAAAAGAAAAGTCTTCAGAGTCCCTCCGTTCCATGTTATAAGACGTTTGGTTTATAAAAATTTACACAT
ATATTTCTTTAGATAAATAGGGTCTTCCTATTTCGGGGGCTTTAGTAGGGTTTACTATTATTCAGGGGTTATGATCTGCG
CCTGCTAGAGATGCTTTTGTGTGTACTATCCATACCATACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis