Browse Element(s) Details


Os.57215.1.S1_at

Description gb:AK111148.1
DB_XREF= gi:32996357
TID=Os.57215.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E12, full insert sequence.
FL= gb:AK111148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4067411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40630OsAffx.19278.2.S1_s_at11/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.2.S1_at8/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.3.S1_at7/1111+23749067..23751121hypothetical protein
LOC_Os11g40630OsAffx.19278.1.S1_at6/1111+23749067..23751121hypothetical protein
LOC_Os11g40640NANA11+23751629..23754250transposon protein, putative, Mutator sub-class
LOC_Os11g40650OsAffx.19277.1.S1_at11/1111+23758366..23759806hypothetical protein
LOC_Os11g40660OsAffx.31409.1.S1_s_at7/1111+23766621..23767283hypothetical protein
LOC_Os11g40670OsAffx.3280.1.S1_x_at1/1111+23767986..23769359retrotransposon protein, putative, unclassified
LOC_Os11g40674Os.57215.1.S1_at11/1111+23772292..23772931expressed protein
LOC_Os11g40680OsAffx.31407.2.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680OsAffx.31407.2.S1_x_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed
LOC_Os11g40680Os.8232.1.S1_at11/1111+23777299..23778841BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57215.1.S1_at--957--6051Chr11:23772350..23772374 (25 bp)
GAGTTGTCACCGACCAGATCGATCA
LOC_Os11g40674
Os.57215.1.S1_at--420--6431Chr11:23772370..23772394 (25 bp)
GATCACCGGTTCCAAGCCATCGTTG
LOC_Os11g40674
Os.57215.1.S1_at--713--651Chr11:23772458..23772482 (25 bp)
ATGAATTCGCCACATCAACGGTGAT
LOC_Os11g40674
Os.57215.1.S1_at--662--10611Chr11:23772528..23772552 (25 bp)
TTCGTCTCTCGGTGATGGCCCATTG
LOC_Os11g40674
Os.57215.1.S1_at--1082--11Chr11:23772549..23772573 (25 bp)
ATTGGCAGTTGTGACGCCCGAGGCA
LOC_Os11g40674
Os.57215.1.S1_at--1026--8891Chr11:23772707..23772731 (25 bp)
TGAGTTTTGGTTGCCGCCTTCTGAA
LOC_Os11g40674
Os.57215.1.S1_at--37--7611Chr11:23772786..23772810 (25 bp)
GGGAATCGCCTCTCGGTGTTTTCGT
LOC_Os11g40674
Os.57215.1.S1_at--186--8791Chr11:23772802..23772826 (25 bp)
TGTTTTCGTCGATTATCTGGCTCCC
LOC_Os11g40674
Os.57215.1.S1_at--515--1411Chr11:23772836..23772860 (25 bp)
AGACACCCAAGAGCCTAGCTTGTGA
LOC_Os11g40674
Os.57215.1.S1_at--325--6131Chr11:23772859..23772883 (25 bp)
GAGGGCCGCCTCCATGTTAGATTTG
LOC_Os11g40674
Os.57215.1.S1_at--457--51Chr11:23772907..23772931 (25 bp)
ATTGATTCCATCTGGTTTTGAGTCC
LOC_Os11g40674
Target Sequence 
GAGTTGTCACCGACCAGATCGATCACCGGTTCCAAGCCATCGTTGCTGCTCGCGTGGATCCACTGCCGGTGCCTGGATCC
CCTTTTTGTCTCTCTGCCTCCCTCTCGCATGAATTCGCCACATCAACGGTGATGGGAGGGGTGGATCCGATGACCTCTTC
CCCTCCTGTGCGGATCCCTTCGTCTCTCGGTGATGGCCCATTGGCAGTTGTGACGCCCGAGGCACGTAGGCGGCAATGAG
ACTGGTGGGCAGCGGATCCGGCGACAAGGGAGGCTCGAGGACGGCGGCGATGAGGCTGGTGGGAAACCGGCGTTGGGAGG
CACGTGGGCAAAGATGAGGCTCGAGGGCACGGTCGGTTGAGTTTTGGTTGCCGCCTTCTGAAGTTGCTGTCGCCGCCTGC
TTCCTCGACATCGCCGCCTGTGGGAGCCGCACTATGGGGAATCGCCTCTCGGTGTTTTCGTCGATTATCTGGCTCCCTCA
ACACCCAGACACCCAAGAGCCTAGCTTGTGAGGGCCGCCTCCATGTTAGATTTGTGGAATCTTGTTGTAACCATGATATT
GATTCCATCTGGTTTTGAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis