Browse Element(s) Details


Os.8943.1.S1_at

Description gb:AK099639.1
DB_XREF= gi:32984848
TID=Os.8943.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059N16, full insert sequence.
FL= gb:AK060913.1 gb:AK099639.1 gb:AK120437.1 gb:AK107324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4051011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40470OsAffx.22848.4.S1_at2/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.4.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40470OsAffx.22848.3.S1_x_at1/1111+23642187..23648131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40480Os.55081.1.S1_at11/1111+23659253..23660610expressed protein
LOC_Os11g40490OsAffx.31407.1.S1_at11/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490Os.29072.1.S1_at4/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40490OsAffx.31407.2.S1_x_at1/1111+23660696..23663612BTB/POZ domain containing protein, expressed
LOC_Os11g40500Os.13577.1.S1_at10/1111+23665106..23668297signal peptidase I family protein, expressed
LOC_Os11g40510Os.8943.1.S1_at11/1111+23669386..23674277RNA recognition motif family protein, expressed
LOC_Os11g40520OsAffx.19275.1.S1_at11/1111+23677484..23677926hypothetical protein
LOC_Os11g40530Os.9671.1.S1_at11/1111+23679587..23680072nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os11g40540Os.50236.1.S1_at11/1111+23683286..23690006Sugar transporter, putative, expressed
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0003730molecular_functionmRNA 3'-UTR binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8943.1.S1_at--473--4771Chr11:23670358..23670382 (25 bp)
GCTGCTCTAGCAATTCAGACTGGTA
LOC_Os11g40510
Os.8943.1.S1_at--533--2951Chr11:23670334..23670358 (25 bp)
AATGGACAACTTATTGGCGGTAGGC
LOC_Os11g40510
Os.8943.1.S1_at--1111--8331Chr11:23670049..23670343 (25 bp)
GGCGGTAGGCAGATCAAGTGTTCCT
LOC_Os11g40510
Os.8943.1.S1_at--634--131Chr11:23669960..23669984 (25 bp)
ATTCAATCCTGGCATGTCGGCGACC
LOC_Os11g40510
Os.8943.1.S1_at--848--2791Chr11:23669899..23669923 (25 bp)
AAGATGGCAGCGAACCCGGCCCTGA
LOC_Os11g40510
Os.8943.1.S1_at--420--8871Chr11:23669877..23669901 (25 bp)
TGATGAGTCAGCACGCCGCCCTAAA
LOC_Os11g40510
Os.8943.1.S1_at--750--4491Chr11:23669779..23669803 (25 bp)
GCCGTCTTCTACTAGAGTGACCTGA
LOC_Os11g40510
Os.8943.1.S1_at--1100--3811Chr11:23669717..23669741 (25 bp)
CTGCCTGCCTCTGTATGACCAAGGA
LOC_Os11g40510
Os.8943.1.S1_at--844--8971Chr11:23669639..23669663 (25 bp)
TGAACCTCTCCTTTTCTACCTTTGT
LOC_Os11g40510
Os.8943.1.S1_at--667--3711Chr11:23669624..23669648 (25 bp)
CTACCTTTGTTATTTGCCAATCTAG
LOC_Os11g40510
Os.8943.1.S1_at--495--4391Chr11:23669609..23669633 (25 bp)
GCCAATCTAGTAATCTTCTCTTCGC
LOC_Os11g40510
Target Sequence 
GCTGCTCTAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGTGTTCCTGGGGAAGCAAGCCAAC
TCCACCAGGGACAGCATCCGCGCCCCTACCCCCTCCAGCACCAGCACCATTCAATCCTGGCATGTCGGCGACCGACCTCC
TAGCCTACGAGCGCACCCTGGCGCTGAGCAAGATGGCAGCGAACCCGGCCCTGATGAGTCAGCACGCCGCCCTAAAGCAG
GCTGCCGCCATGGGGATGGGCGCCGGAGCCAGCCAGGCCATCTACGACGGCGGCTACCAGAGTGCCAACGCCGTCTTCTA
CTAGAGTGACCTGAGTACCTGACCCCCCATGAAGCAGACCACCACCATTGCCTGCCTGCCTCTGTATGACCAAGGAGGAT
GATGATGACCCCTCCACCCCCTTATACATATAGTAGATGAAGCCTTACCTGAACCTCTCCTTTTCTACCTTTGTTATTTG
CCAATCTAGTAATCTTCTCTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis